Gm10076 Gene Detail

Summary

• Symbol
  Gm10076
• Name
  predicted gene 10076

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3704451
  NCBI Gene: 100126819
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:105919260-105919653 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 56.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704451	lncRNA gene	Chr14:105914427-105919847 (+)
129S1/SvImJ	ENSMUSG00200018112	lncRNA gene	Chr14:94525763-94526167 (+)
A/J	ENSMUSG00195045575	lncRNA gene	Chr1:32653005-32653406 (-)
A/J	ENSMUSG00195004187	lncRNA gene	Chr14:94615845-94616251 (+)
AKR/J	ENSMUSG00220001232	lncRNA gene	Chr14:94043245-94043651 (+)
BALB/cJ	ENSMUSG00180000131	lncRNA gene	Chr5:81256364-81256762 (-)
BALB/cJ	ENSMUSG00180010483	lncRNA gene	Chr14:94099403-94099809 (+)
C3H/HeJ	ENSMUSG00175034155	lncRNA gene	Chr2:106947937-106948341 (-)
C3H/HeJ	ENSMUSG00175013773	lncRNA gene	Chr14:95990669-95991075 (+)
C3H/HeJ	ENSMUSG00175046693	lncRNA gene	Chr5:83334497-83334895 (-)
C3H/HeJ	ENSMUSG00175001650	lncRNA gene	Chr1:32657186-32657587 (-)
C57BL/6NJ	ENSMUSG00215007163	lncRNA gene	Chr14:94173307-94173713 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002810	lncRNA gene	Chr14:95549813-95549817 (+)
CBA/J	ENSMUSG00210007016	lncRNA gene	Chr5:82153352-82153750 (-)
CBA/J	ENSMUSG00210014064	lncRNA gene	Chr14:94678057-94678463 (+)
DBA/2J	ENSMUSG00185042176	lncRNA gene	Chr5:84072470-84072876 (-)
DBA/2J	ENSMUSG00185011326	lncRNA gene	Chr14:99842290-99842697 (+)
FVB/NJ	ENSMUSG00205008907	lncRNA gene	Chr14:93789503-93789908 (+)
FVB/NJ	ENSMUSG00205041304	lncRNA gene	Chr1:32682642-32683042 (-)
FVB/NJ	ENSMUSG00205020355	lncRNA gene	Chr18:59691811-59692213 (+)
JF1/MsJ	ENSUMUG00000013897	lncRNA gene	Chr14:110852059-110852063 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001708	lncRNA gene	Chr14:94462673-94463077 (+)
NOD/ShiLtJ	ENSMUSG00190044235	lncRNA gene	Chr5:81014701-81015097 (-)
NZO/HlLtJ	ENSMUSG00225021960	lncRNA gene	Chr14:102105832-102106238 (+)
NZO/HlLtJ	ENSMUSG00225031224	lncRNA gene	Chr18:62148334-62148737 (+)
PWK/PhJ	ENSLUMG00010003733	lncRNA gene	Chr2:106361144-106361543 (-)
PWK/PhJ	ENSLUMG00010004468	lncRNA gene	Chr8:93627473-93627877 (+)
PWK/PhJ	ENSLUMG00010051182	lncRNA gene	Chr15:97094335-97094735 (+)
PWK/PhJ	ENSLUMG00010001233	lncRNA gene	Chr14:93722792-93723198 (+)
SPRET/EiJ	ENSMSPG00010009795	lncRNA gene	Chr14:97727600-97727604 (+)
WSB/EiJ	ENSIUOG00005006609	lncRNA gene	Chr14:93664796-93665201 (+)
WSB/EiJ	ENSIUOG00005030961	lncRNA gene	Chr5:83961309-83961706 (-)

Homology

• Gene Tree
  Gm10076
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10076
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000060143 (Evidence)
• NCBI Gene
  100126819

Representative Sequences			Length	Strain/Species
genomic	100126819	NCBI Gene Model | MGI Sequence Detail	394	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:67314 Roix J, et al., Molecular and functional mapping of the piebald deletion complex on mouse chromosome 14. Genetics. 2001 Feb;157(2):803-15

TSS for Gm10076:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127095	Chr14:105919258-105919265 (+)	2 bp
Tssr127096	Chr14:105919407-105919426 (+)	157 bp