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Trav6n-5 Gene Detail
Summary
  • Symbol
    Trav6n-5
  • Name
    T cell receptor alpha variable 6N-5
  • Synonyms
    ENSMUSG00000072087, Gm10894
Location &
Maps
more
  • Sequence Map
    Chr14:53342328-53342801 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    22 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704437
 gene segment Chr14:53342328-53342801 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0002499
 gene segment Chr14:45634940-45635412 (+)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002631
 gene segment Chr14:49312686-49313154 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002442
 gene segment Chr14:44095813-44096282 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0002473
 gene segment Chr14:45381075-45381544 (+)
FVB/NJ MGP_FVBNJ_G0002486
 gene segment Chr14:44951864-44952351 (+)
LP/J MGP_LPJ_G0002529
 gene segment Chr14:47500051-47500520 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002485
 gene segment Chr14:50647793-50648258 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002620
 gene segment Chr14:46620323-46620793 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002361
 gene segment Chr14:43088131-43088596 (+)
WSB/EiJ MGP_WSBEiJ_G0002470
 gene segment Chr14:46920398-46920867 (+)



Homology
more
  • Human Ortholog
    TRAV9-1, T cell receptor alpha variable 9-1
  • Vertebrate Orthologs
    11
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV9-1, T cell receptor alpha variable 9-1
  • Synonyms
    TCRAV9S1, TRAV91
  • Links
    NCBI Gene ID: 28678
    UniProt: A0A075B6T8

  • Chr Location
    14q11.2; chr14:21811502-21811977 (+)  GRCh38
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    17
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126451 NCBI Gene Model | MGI Sequence Detail 474 C57BL/6J ±  kb
polypeptide A0A075B621 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 7
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory