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Trav6n-5 Gene Detail
Summary
  • Symbol
    Trav6n-5
  • Name
    T cell receptor alpha variable 6N-5
  • Synonyms
    ENSMUSG00000072087, Gm10894
Location &
Maps
more
  • Sequence Map
    Chr14:53342328-53342801 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704437
 gene segment Chr14:53342328-53342801 (+)
129S1/SvImJ ENSMUSG00200042373
 gene segment Chr14:42256508-42256980 (+)
A/J ENSMUSG00195026364
 gene segment Chr14:42061440-42061910 (+)
AKR/J no annotation
BALB/cJ ENSMUSG00180051844
 gene segment Chr14:42100447-42100919 (+)
C3H/HeJ ENSMUSG00175049633
 gene segment Chr14:43782922-43783394 (+)
C57BL/6NJ ENSMUSG00215048895
 gene segment Chr14:42051136-42051606 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005050112
 gene segment Chr14:43870496-43870965 (+)
CBA/J ENSMUSG00210047329
 gene segment Chr14:42039671-42040141 (+)
DBA/2J ENSMUSG00185055158
 gene segment Chr14:47253624-47254093 (+)
FVB/NJ ENSMUSG00205048121
 gene segment Chr14:41378142-41378612 (+)
JF1/MsJ ENSUMUG00000053624
 gene segment Chr14:58813300-58813769 (+)
LP/J no annotation
NOD/ShiLtJ ENSMUSG00190052048
 gene segment Chr14:41725525-41725995 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010050960
 gene segment Chr14:41669230-41669702 (+)
SPRET/EiJ ENSMSPG00010048431
 gene segment Chr14:44950380-44950854 (+)
WSB/EiJ ENSIUOG00005048228
 gene segment Chr14:41429572-41430041 (+)



Homology
more
  • Human Ortholog
    TRAV9-1, T cell receptor alpha variable 9-1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV9-1, T cell receptor alpha variable 9-1
  • Synonyms
    TCRAV9S1, TRAV91
  • Links
    NCBI Gene ID: 28678
    UniProt: A0A075B6T8

  • Chr Location
    14q11.2; chr14:21811502-21811977 (+)  GRCh38
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126451 NCBI Gene Model | MGI Sequence Detail 474 C57BL/6J ±  kb
polypeptide A0A075B621 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory