Gm10479 Gene Detail

Summary

• Symbol
  Gm10479
• Name
  predicted gene 10479

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3704385
  NCBI Gene: 108167321
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:20476895-20485418 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 8.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704385	lncRNA gene	Chr12:20465522-20601463 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195020206	lncRNA gene	Chr12:16590314-16598842 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180009419	lncRNA gene	Chr12:16667634-16676162 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215006243	lncRNA gene	Chr12:15022624-15031131 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210008425	lncRNA gene	Chr12:17211854-17220778 (-)
DBA/2J	ENSMUSG00185004287	lncRNA gene	Chr12:16068084-16077006 (-)
FVB/NJ	ENSMUSG00205001862	lncRNA gene	Chr12:15624013-15632519 (-)
JF1/MsJ	ENSUMUG00000011103	lncRNA gene	Chr12:17405623-17414128 (+)
JF1/MsJ	ENSUMUG00000012495	lncRNA gene	Chr12:18747514-18756435 (-)
JF1/MsJ	ENSUMUG00000012804	lncRNA gene	Chr12:20268675-20277529 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190008426	lncRNA gene	Chr12:630749-639255 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004920	lncRNA gene	Chr12:16687645-16696150 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001730	lncRNA gene	Chr12:15000489-15009526 (+)

Homology

• Gene Tree
  Gm10479
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  10

• Ensembl
  ENSMUSG00000116606 (Evidence)
• NCBI Gene
  108167321

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116606	Ensembl Gene Model | MGI Sequence Detail	8524	C57BL/6J
transcript	ENSMUST00000232483	Ensembl | MGI Sequence Detail	654	Not Applicable
polypeptide	XP_036013636	RefSeq | MGI Sequence Detail	113	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14