Gm10039 Pseudogene Detail

Summary

• Symbol
  Gm10039
• Name
  predicted pseudogene 10039

• Feature Type
  pseudogene
• IDs
  MGI:3704382
  NCBI Gene: 100041835
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:100252542-100252952 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 63.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704382	pseudogene	Chr11:100252234-100252983 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195052769	pseudogene	Chr11:97220660-97221070 (-)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215054242	pseudogene	Chr11:97071531-97071941 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205050451	pseudogene	Chr11:97402439-97402849 (-)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190052894	pseudogene	Chr11:97582004-97582414 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051108	pseudogene	Chr11:97347056-97347466 (-)

Homology

• Gene Tree
  Gm10039
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm10039
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000091478 (Evidence)
• NCBI Gene
  100041835

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091478	Ensembl Gene Model | MGI Sequence Detail	411	C57BL/6J
transcript	ENSMUST00000081241	Ensembl | MGI Sequence Detail	411	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:50799 Liu P, et al., Embryonic lethality and tumorigenesis caused by segmental aneuploidy on mouse chromosome 11. Genetics. 1998 Nov;150(3):1155-68
• Latest
  J:232020 Ermakova O, et al., Sensitized phenotypic screening identifies gene dosage sensitive region on chromosome 11 that predisposes to disease in mice. EMBO Mol Med. 2011 Jan;3(1):50-66

TSS for Gm10039:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110794	Chr11:100252982-100252983 (-)	-31 bp