Gm9923 Pseudogene Detail

Summary

• Symbol
  Gm9923
• Name
  predicted pseudogene 9923

• Feature Type
  pseudogene
• IDs
  MGI:3704365
  NCBI Gene: 100040505
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:72145151-72146986 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 37.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704365	pseudogene	Chr10:72145031-72147868 (+)
129S1/SvImJ	ENSMUSG00200017865	pseudogene	Chr10:68843512-68845347 (+)
A/J	ENSMUSG00195005964	pseudogene	Chr10:69156801-69158636 (+)
AKR/J	ENSMUSG00220030734	pseudogene	Chr10:68800257-68802092 (+)
BALB/cJ	ENSMUSG00180008087	pseudogene	Chr10:69171396-69173231 (+)
C3H/HeJ	ENSMUSG00175012924	pseudogene	Chr10:69022490-69024325 (+)
C57BL/6NJ	ENSMUSG00215004123	pseudogene	Chr10:68780378-68782213 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015163	protein coding gene	Chr10:17328787-17343051 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210009980	pseudogene	Chr10:68886382-68888217 (+)
DBA/2J	ENSMUSG00185020877	pseudogene	Chr10:69241399-69243234 (+)
FVB/NJ	ENSMUSG00205007789	pseudogene	Chr10:68975664-68977499 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230051374	pseudogene	Chr10:71011315-71013150 (+)
NOD/ShiLtJ	ENSMUSG00190008136	pseudogene	Chr10:69213198-69215033 (+)
NZO/HlLtJ	ENSMUSG00225048573	pseudogene	Chr10:75307563-75309398 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9923
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9923
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000053830 (Evidence)
• NCBI Gene
  100040505

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000053830	Ensembl Gene Model | MGI Sequence Detail	1836	C57BL/6J
transcript	ENSMUST00000217785	Ensembl | MGI Sequence Detail	1836	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87