Gm10825 Gene Detail

Summary

• Symbol
  Gm10825
• Name
  predicted gene 10825

• Feature Type
  lncRNA gene
• IDs
  MGI:3704351
  NCBI Gene: 100038752
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:22278712-22283369 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 10.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704351	lncRNA gene	Chr10:22269416-22336663 (+)
129S1/SvImJ	ENSMUSG00200010277	lncRNA gene	Chr10:19089513-19094107 (+)
A/J	ENSMUSG00195007040	lncRNA gene	Chr10:19468748-19473321 (+)
AKR/J	ENSMUSG00220010308	lncRNA gene	Chr10:19171242-19175839 (+)
BALB/cJ	ENSMUSG00180016200	lncRNA gene	Chr10:19592036-19596609 (+)
C3H/HeJ	ENSMUSG00175021014	lncRNA gene	Chr10:19236997-19241589 (+)
C57BL/6NJ	ENSMUSG00215004048	lncRNA gene	Chr10:19059672-19064248 (+)
C57BL/6NJ	ENSMUSG00215003872	lncRNA gene	Chr10:19044145-19048733 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210015788	lncRNA gene	Chr10:19174063-19178651 (+)
DBA/2J	ENSMUSG00185008283	lncRNA gene	Chr10:19349457-19354044 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000015125	lncRNA gene	Chr10:19257898-19262514 (+)
LP/J	ENSMUSG00230011737	lncRNA gene	Chr10:21191203-21195776 (+)
NOD/ShiLtJ	ENSMUSG00190011312	lncRNA gene	Chr10:19523731-19528304 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010015809	lncRNA gene	Chr10:19147099-19151713 (+)
PWK/PhJ	ENSLUMG00010015842	lncRNA gene	Chr10:19105894-19110497 (+)
PWK/PhJ	ENSLUMG00010015851	lncRNA gene	Chr10:19126507-19131111 (+)
PWK/PhJ	ENSLUMG00010015832	lncRNA gene	Chr10:19085303-19089921 (+)
SPRET/EiJ	ENSMSPG00010011457	lncRNA gene	Chr10:19754434-19759017 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10825
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10825
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096937 (Evidence)
• NCBI Gene
  100038752

Representative Sequences			Length	Strain/Species
genomic	100038752	NCBI Gene Model | MGI Sequence Detail	4658	C57BL/6J
transcript	NR_028580	RefSeq | MGI Sequence Detail	4548	C57BL/6
polypeptide	Q3TQ06	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87