Gm9797 Pseudogene Detail

Summary

• Symbol
  Gm9797
• Name
  predicted pseudogene 9797

• Feature Type
  pseudogene
• IDs
  MGI:3704349
  NCBI Gene: 100039343
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:11485042-11485335 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 3.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704349	pseudogene	Chr10:11484968-11486182 (+)
129S1/SvImJ	ENSMUSG00200019470	pseudogene	Chr3:79447528-79448742 (+)
129S1/SvImJ	ENSMUSG00200011258	pseudogene	Chr10:8482141-8483396 (+)
A/J	ENSMUSG00195010050	pseudogene	Chr10:8382319-8383572 (+)
A/J	ENSMUSG00195021283	pseudogene	ChrX:104033467-104034691 (-)
A/J	ENSMUSG00195012149	pseudogene	Chr3:79454037-79455251 (+)
AKR/J	ENSMUSG00220007679	pseudogene	Chr10:8501876-8503112 (+)
BALB/cJ	ENSMUSG00180024184	pseudogene	Chr10:8544247-8545501 (+)
BALB/cJ	ENSMUSG00180028191	pseudogene	ChrX:100671839-100673062 (-)
C3H/HeJ	ENSMUSG00175013255	pseudogene	Chr10:8534996-8536249 (+)
C3H/HeJ	ENSMUSG00175007939	pseudogene	Chr3:79380704-79381918 (+)
C3H/HeJ	ENSMUSG00175021986	pseudogene	ChrX:104323258-104324481 (-)
C57BL/6NJ	ENSMUSG00215005566	pseudogene	Chr10:8429378-8430638 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033392	protein coding gene	ChrX:123325336-123329320 (-)
CAST/EiJ	ENSTCUG00005018164	pseudogene	Chr10:8442197-8442197 (+)
CBA/J	ENSMUSG00210021169	pseudogene	ChrX:101156283-101157506 (-)
CBA/J	ENSMUSG00210012673	pseudogene	Chr10:8480645-8481898 (+)
CBA/J	ENSMUSG00210026131	pseudogene	Chr3:79511241-79512455 (+)
DBA/2J	ENSMUSG00185011036	pseudogene	Chr10:8516196-8517452 (+)
FVB/NJ	ENSMUSG00205009253	pseudogene	Chr10:8490793-8492029 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230037569	pseudogene	Chr3:81656061-81657275 (+)
LP/J	ENSMUSG00230019621	pseudogene	Chr10:10143547-10144799 (+)
NOD/ShiLtJ	ENSMUSG00190025725	pseudogene	Chr10:8513696-8514948 (+)
NZO/HlLtJ	ENSMUSG00225017368	pseudogene	Chr10:14664772-14666027 (+)
PWK/PhJ	ENSLUMG00010020787	pseudogene	Chr10:8327916-8329163 (+)
PWK/PhJ	ENSLUMG00010013474	pseudogene	Chr13:68788380-68789612 (+)
PWK/PhJ	ENSLUMG00010027265	pseudogene	ChrX:99530948-99532166 (-)
SPRET/EiJ	ENSMSPG00010007185	pseudogene	Chr10:8689729-8689729 (+)
WSB/EiJ	ENSIUOG00005014149	pseudogene	Chr10:8426989-8426989 (+)

Homology

• Gene Tree
  Gm9797
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000045455 (Evidence)
• NCBI Gene
  100039343

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045455	Ensembl Gene Model | MGI Sequence Detail	294	C57BL/6J
transcript	ENSMUST00000218003	Ensembl | MGI Sequence Detail	294	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm9797:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92365	Chr10:11485000-11485013 (+)	-35 bp