Rps27rt Gene Detail

Summary

• Symbol
  Rps27rt
• Name
  ribosomal protein S27, retrogene
• Synonyms
  Gm9846, Rps27l2

• Feature Type
  protein coding gene
• IDs
  MGI:3704345
  NCBI Gene: 100043813
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:114811434-114811807 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 66.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704345	protein coding gene	Chr9:114811434-114811807 (-)
129S1/SvImJ	ENSMUSG00200036667	protein coding gene	Chr3:86975179-86976308 (-)
A/J	ENSMUSG00195051696	protein coding gene	Chr3:86990330-86991459 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180044160	protein coding gene	Chr3:87081624-87083360 (-)
C3H/HeJ	ENSMUSG00175045174	protein coding gene	Chr3:86922891-86924020 (-)
C57BL/6NJ	ENSMUSG00215047480	protein coding gene	Chr3:87362937-87364066 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210045549	protein coding gene	Chr3:87060536-87061665 (-)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205026813	protein coding gene	Chr3:85984544-85985673 (-)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190038623	protein coding gene	Chr3:87456139-87457267 (-)
NZO/HlLtJ	ENSMUSG00225008837	protein coding gene	Chr3:91952568-91955878 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  RPS27, ribosomal protein S27

• Vertebrate Orthologs
  5

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  RPS27, ribosomal protein S27
  
• Synonyms
  DBA17, eS27, MPS-1, MPS1, S27
• Links
  HGNC:10416

  NCBI Gene ID: 6232

  UniProt: P42677

  
  
• Chr Location
  1q21.3; chr1:153990749-153992333 (+)  GRCh38

---

• MGI Vertebrate Homology
  Rps27rt stringent orthology
  1 human;1 mouse;2 rat;2 zebrafish
  
• HCOP
  vertebrate homology predictions: RPS27
• Gene Tree
  Rps27rt
  

Human Diseases

• Diseases
  1 with human RPS27 associations

				Human Disease	Mouse Models
				Diamond-Blackfan anemia 17 IDs Diamond-Blackfan anemia 17       DOID:0111880 OMIM:617409

Click on a disease name to see all genes associated with that disease.

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  2
• CCDS
  CCDS52952.1

• Ensembl
  ENSMUSG00000050621 (Evidence)
• NCBI Gene
  100043813

Representative Sequences			Length	Strain/Species
genomic	100043813	NCBI Gene Model | MGI Sequence Detail	374	C57BL/6J
transcript	NM_001190258	RefSeq | MGI Sequence Detail	374	C57BL/6
polypeptide	NP_001177187	RefSeq | MGI Sequence Detail	84	C57BL/6

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;

TSS for Rps27rt:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91885	Chr9:114811807-114811810 (-)	-2 bp