Gm10642 Gene Detail

Summary

• Symbol
  Gm10642
• Name
  predicted gene 10642

• Feature Type
  lncRNA gene
• IDs
  MGI:3704338
  NCBI Gene: 100379146
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:70563533-70565144 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 39.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704338	lncRNA gene	Chr9:70563533-70565144 (+)
129S1/SvImJ	ENSMUSG00200044152	lncRNA gene	Chr9:67665630-67667240 (+)
A/J	ENSMUSG00195027231	lncRNA gene	Chr9:67441757-67443368 (+)
AKR/J	ENSMUSG00220043492	lncRNA gene	Chr9:67575508-67577119 (+)
BALB/cJ	ENSMUSG00180019190	lncRNA gene	Chr9:67556099-67557710 (+)
C3H/HeJ	ENSMUSG00175013836	lncRNA gene	Chr9:67569465-67571076 (+)
C57BL/6NJ	ENSMUSG00215036933	lncRNA gene	Chr9:67507380-67508991 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032406	protein coding gene	Chr9:67824976-67826583 (+)
CAST/EiJ	ENSTCUG00005033889	lncRNA gene	Chr9:67382816-67384428 (+)
CBA/J	ENSMUSG00210014758	lncRNA gene	Chr9:67650188-67651799 (+)
DBA/2J	ENSMUSG00185036260	lncRNA gene	Chr9:67673903-67675514 (+)
FVB/NJ	ENSMUSG00205033435	lncRNA gene	Chr9:67948155-67949766 (+)
JF1/MsJ	ENSUMUG00000039847	lncRNA gene	Chr9:67708260-67709874 (+)
LP/J	ENSMUSG00230027830	lncRNA gene	Chr9:67860771-67862381 (+)
NOD/ShiLtJ	ENSMUSG00190024092	lncRNA gene	Chr9:67772615-67774226 (+)
NZO/HlLtJ	ENSMUSG00225046869	lncRNA gene	Chr9:67979268-67980879 (+)
PWK/PhJ	ENSLUMG00010026700	lncRNA gene	Chr9:67645239-67646856 (+)
SPRET/EiJ	ENSMSPG00010023123	lncRNA gene	Chr9:68727356-68728972 (+)
WSB/EiJ	ENSIUOG00005028656	lncRNA gene	Chr9:67138015-67139641 (+)

Homology

• Gene Tree
  Gm10642
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10642
• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074213 (Evidence)
• NCBI Gene
  100379146

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074213	Ensembl Gene Model | MGI Sequence Detail	1612	C57BL/6J
transcript	ENSMUST00000238671	Ensembl | MGI Sequence Detail	1612	Not Applicable
polypeptide	Q3TWM1	UniProt | EBI | MGI Sequence Detail	71	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm10642:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85924	Chr9:70563511-70563527 (+)	-14 bp
Tssr85925	Chr9:70563530-70563543 (+)	4 bp