Gm9967 Gene Detail

Summary

• Symbol
  Gm9967
• Name
  predicted gene 9967

• Feature Type
  lncRNA gene
• IDs
  MGI:3704300
  NCBI Gene: 100038751
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:126367246-126376032 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 69.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704300	lncRNA gene	Chr7:126367246-126376032 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015689	unclassified non-coding RNA gene	Chr7:131066463-131075178 (-)
A/J	MGP_AJ_G0015667	unclassified non-coding RNA gene	Chr7:127593862-127602581 (-)
AKR/J	MGP_AKRJ_G0015630	unclassified non-coding RNA gene	Chr7:130824338-130836319 (-)
BALB/cJ	MGP_BALBcJ_G0015628	unclassified non-coding RNA gene	Chr7:127254346-127264081 (-)
C3H/HeJ	MGP_C3HHeJ_G0015450	unclassified non-coding RNA gene	Chr7:130764454-130774011 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016083	unclassified non-coding RNA gene	Chr7:136160841-136169575 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013812	unclassified non-coding RNA gene	Chr7:128786038-128794982 (-)
CAST/EiJ	MGP_CASTEiJ_G0015005	unclassified non-coding RNA gene	Chr7:122547342-122560912 (-)
CBA/J	MGP_CBAJ_G0015431	unclassified non-coding RNA gene	Chr7:140744260-140753002 (-)
DBA/2J	MGP_DBA2J_G0015527	unclassified non-coding RNA gene	Chr7:125567621-125576351 (-)
FVB/NJ	MGP_FVBNJ_G0015533	unclassified non-coding RNA gene	Chr7:125414773-125423499 (-)
LP/J	MGP_LPJ_G0015607	unclassified non-coding RNA gene	Chr7:132536708-132545544 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015555	unclassified non-coding RNA gene	Chr7:141925593-141934293 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016125	unclassified non-coding RNA gene	Chr7:129833707-129842424 (-)
PWK/PhJ	MGP_PWKPhJ_G0014787	unclassified non-coding RNA gene	Chr7:118562351-118571289 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014576	unclassified non-coding RNA gene	Chr7:116684595-116693404 (-)
WSB/EiJ	MGP_WSBEiJ_G0015110	unclassified non-coding RNA gene	Chr7:130814382-130823099 (-)

Homology

• Gene Tree
  Gm9967
  

Human Diseases

• References
  3 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  35 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  2
• Targeted
  5
• Genomic Mutations
  5 involving Gm9967
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• UniProt
  1

• Ensembl
  ENSMUSG00000055323 (Evidence)
• NCBI Gene
  100038751

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055323	Ensembl Gene Model | MGI Sequence Detail	8787	C57BL/6J
transcript	ENSMUST00000068836	Ensembl | MGI Sequence Detail	1873	Not Applicable
polypeptide	Q8CBN6	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 42

  Diseases 3

  Phenotypes 35
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
• Latest
  J:342026 Hasegawa Y, et al., Microglial cannabinoid receptor type 1 mediates social memory deficits in mice produced by adolescent THC exposure and 16p11.2 duplication. Nat Commun. 2023 Oct 25;14(1):6559

TSS for Gm9967:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr74813	Chr7:126375946-126376027 (-)	45 bp