Rps13-ps2 Pseudogene Detail

Summary

• Symbol
  Rps13-ps2
• Name
  ribosomal protein S13, pseudogene 2
• Synonyms
  Gm10159

• Feature Type
  pseudogene
• IDs
  MGI:3704295
  NCBI Gene: 100039924
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:88179654-88180106 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 49.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704295	pseudogene	Chr7:88179611-88180132 (-)
129S1/SvImJ	ENSMUSG00200028988	pseudogene	Chr7:74977961-74978413 (-)
A/J	ENSMUSG00195043771	pseudogene	Chr7:79507666-79508118 (-)
AKR/J	ENSMUSG00220044617	pseudogene	Chr7:72992630-72993082 (-)
BALB/cJ	ENSMUSG00180039001	pseudogene	Chr7:76184612-76185064 (-)
C3H/HeJ	ENSMUSG00175038694	pseudogene	Chr7:76873047-76873499 (-)
C57BL/6NJ	ENSMUSG00215035601	pseudogene	Chr7:76015032-76015484 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210044376	pseudogene	Chr7:76715941-76716393 (-)
DBA/2J	ENSMUSG00185033750	pseudogene	Chr7:81045458-81045910 (-)
FVB/NJ	ENSMUSG00205038515	pseudogene	Chr7:76672604-76673056 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230017970	pseudogene	Chr7:87135111-87135563 (-)
NOD/ShiLtJ	ENSMUSG00190032880	pseudogene	Chr7:76928807-76929259 (-)
NZO/HlLtJ	ENSMUSG00225011626	pseudogene	Chr7:85409747-85410199 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005036367	pseudogene	Chr7:77270982-77271434 (-)

Homology

• Gene Tree
  Rps13-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  24 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  3
• Genomic Mutations
  4 involving Rps13-ps2
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000069972 (Evidence)
• NCBI Gene
  100039924

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000069972	Ensembl Gene Model | MGI Sequence Detail	453	C57BL/6J
transcript	ENSMUST00000182017	Ensembl | MGI Sequence Detail	453	Not Applicable

References

• Summaries
  All 28

  Phenotypes 24
• Earliest
  J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Rps13-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr73469	Chr7:88180134-88180136 (-)	-29 bp