Gm10420 Pseudogene Detail

Summary

• Symbol
  Gm10420
• Name
  predicted gene 10420

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3704275
  NCBI Gene: 108169197
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:122672960-122673841 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 57.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704275	pseudogene	Chr6:122672937-122673882 (+)
129S1/SvImJ	ENSMUSG00200051446	pseudogene	Chr6:119849338-119850219 (+)
A/J	ENSMUSG00195048631	pseudogene	Chr6:119273707-119274588 (+)
AKR/J	ENSMUSG00220035264	pseudogene	Chr6:118144797-118145678 (+)
BALB/cJ	ENSMUSG00180005216	pseudogene	Chr17:75519720-75520601 (+)
BALB/cJ	ENSMUSG00180049644	pseudogene	Chr6:119632522-119633403 (+)
C3H/HeJ	ENSMUSG00175050934	pseudogene	Chr6:119296529-119297410 (+)
C57BL/6NJ	ENSMUSG00215048625	pseudogene	Chr6:119651875-119652756 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050548	pseudogene	Chr6:119333628-119334509 (+)
CBA/J	ENSMUSG00210046424	pseudogene	Chr6:119399041-119399922 (+)
DBA/2J	ENSMUSG00185048638	pseudogene	Chr6:120040404-120041285 (+)
FVB/NJ	ENSMUSG00205051846	pseudogene	Chr6:118333927-118334808 (+)
JF1/MsJ	ENSUMUG00000053368	pseudogene	Chr6:118660839-118661723 (+)
LP/J	ENSMUSG00230048732	pseudogene	Chr6:121242143-121243024 (+)
NOD/ShiLtJ	ENSMUSG00190051409	pseudogene	Chr6:119011687-119012568 (+)
NZO/HlLtJ	ENSMUSG00225017730	pseudogene	Chr6:123141706-123142587 (+)
PWK/PhJ	ENSLUMG00010049425	pseudogene	Chr6:117969678-117970559 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005045529	pseudogene	Chr6:119646030-119646911 (+)

Homology

• Gene Tree
  Gm10420
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000072789 (Evidence)
• NCBI Gene
  108169197

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072789	Ensembl Gene Model | MGI Sequence Detail	882	C57BL/6J
transcript	ENSMUST00000121713	Ensembl | MGI Sequence Detail	882	Not Applicable
polypeptide	XP_036008359	RefSeq | MGI Sequence Detail	293	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10420:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58693	Chr6:122672930-122672935 (+)	-27 bp