Gm16499 Gene Detail

Summary

• Symbol
  Gm16499
• Name
  predicted gene 16499
• Synonyms
  Gm43938

• Feature Type
  lncRNA gene
• IDs
  MGI:3704267
  NCBI Gene: 100049166
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:53800711-53835998 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 26.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1061 from dbSNP Build 142
• Strain Annotations
  37

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704267	lncRNA gene	Chr6:53795683-53845315 (+)
129S1/SvImJ	ENSMUSG00200006086	lncRNA gene	Chr6:50771072-50820530 (+)
129S1/SvImJ	ENSMUSG00200006073	lncRNA gene	Chr6:50772303-50774479 (+)
A/J	ENSMUSG00195034026	lncRNA gene	Chr6:50504275-50553696 (+)
A/J	ENSMUSG00195033978	lncRNA gene	Chr6:50505506-50507682 (+)
AKR/J	ENSMUSG00220004497	lncRNA gene	Chr6:50205806-50207982 (+)
AKR/J	ENSMUSG00220004512	lncRNA gene	Chr6:50204575-50254029 (+)
BALB/cJ	ENSMUSG00180010526	lncRNA gene	Chr6:50799501-50801677 (+)
BALB/cJ	ENSMUSG00180010538	lncRNA gene	Chr6:50798270-50847696 (+)
C3H/HeJ	ENSMUSG00175041919	lncRNA gene	Chr6:50563348-50612802 (+)
C3H/HeJ	ENSMUSG00175041821	lncRNA gene	Chr6:50564579-50566755 (+)
C57BL/6NJ	ENSMUSG00215031469	lncRNA gene	Chr6:50779898-50829341 (+)
C57BL/6NJ	ENSMUSG00215031268	lncRNA gene	Chr6:50781129-50783305 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003861	antisense lncRNA gene	Chr6:48286078-48335698 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006349	lincRNA gene	Chr6:48287309-48289695 (+)
CAST/EiJ	ENSTCUG00005005155	lncRNA gene	Chr6:50043197-50093077 (+)
CAST/EiJ	ENSTCUG00005005141	lncRNA gene	Chr6:50044437-50046613 (+)
CBA/J	ENSMUSG00210034685	lncRNA gene	Chr6:50607676-50657133 (+)
CBA/J	ENSMUSG00210034651	lncRNA gene	Chr6:50608907-50611083 (+)
DBA/2J	ENSMUSG00185019583	lncRNA gene	Chr6:51188553-51190729 (+)
DBA/2J	ENSMUSG00185019636	lncRNA gene	Chr6:51187322-51236778 (+)
FVB/NJ	ENSMUSG00205029148	lncRNA gene	Chr6:50833152-50882715 (+)
FVB/NJ	ENSMUSG00205028991	lncRNA gene	Chr6:50834383-50836559 (+)
JF1/MsJ	ENSUMUG00000036395	lncRNA gene	Chr6:50565236-50567408 (+)
JF1/MsJ	ENSUMUG00000036451	lncRNA gene	Chr6:50564005-50614004 (+)
LP/J	ENSMUSG00230013517	lncRNA gene	Chr6:52268243-52317695 (+)
LP/J	ENSMUSG00230013454	lncRNA gene	Chr6:52269474-52271650 (+)
NOD/ShiLtJ	ENSMUSG00190008970	lncRNA gene	Chr6:50518828-50568340 (+)
NOD/ShiLtJ	ENSMUSG00190008960	lncRNA gene	Chr6:50520059-50522235 (+)
NZO/HlLtJ	ENSMUSG00225013570	lncRNA gene	Chr6:54253546-54255722 (+)
NZO/HlLtJ	ENSMUSG00225013600	lncRNA gene	Chr6:54252315-54301765 (+)
PWK/PhJ	ENSLUMG00010021386	lncRNA gene	Chr6:50300807-50350183 (+)
PWK/PhJ	ENSLUMG00010021339	lncRNA gene	Chr6:50302038-50304210 (+)
SPRET/EiJ	ENSMSPG00010009562	lncRNA gene	Chr6:50904674-50906865 (+)
SPRET/EiJ	ENSMSPG00010009616	lncRNA gene	Chr6:50903434-50954627 (+)
WSB/EiJ	ENSIUOG00005021168	lncRNA gene	Chr6:50855832-50858008 (+)
WSB/EiJ	ENSIUOG00005021205	lncRNA gene	Chr6:50854601-50904163 (+)

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  68
• RefSeq
  5
• UniProt
  1

• Ensembl
  ENSMUSG00000108175 (Evidence), ENSMUSG00000108255 (Evidence)
• NCBI Gene
  100049166

Representative Sequences			Length	Strain/Species
genomic	100049166	NCBI Gene Model | MGI Sequence Detail	35288	C57BL/6J
transcript	BC006619	GenBank | ENA | DDBJ | MGI Sequence Detail	2193	FVB/N
polypeptide	Q923D0	UniProt | EBI | MGI Sequence Detail	21	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:5690330

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;