5930411N13Rik Gene Detail

Summary

• Symbol
  5930411N13Rik
• Name
  RIKEN cDNA 5930411N13 gene
• Synonyms
  Gm43137

• Feature Type
  lncRNA gene
• IDs
  MGI:3704253
  NCBI Gene: 118568795
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:110375259-110379067 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704253	lncRNA gene	Chr5:110374259-110379067 (-)
129S1/SvImJ	ENSMUSG00200024277	lncRNA gene	Chr5:104141455-104142048 (-)
A/J	ENSMUSG00195040493	lncRNA gene	Chr5:103615101-103615694 (-)
AKR/J	ENSMUSG00220051662	lncRNA gene	Chr5:103153838-103154431 (-)
BALB/cJ	ENSMUSG00180048077	lncRNA gene	Chr5:103766843-103767436 (-)
C3H/HeJ	ENSMUSG00175048385	lncRNA gene	Chr5:105760630-105761223 (-)
C57BL/6NJ	ENSMUSG00215036475	lncRNA gene	Chr5:103775693-103776286 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003727	antisense lncRNA gene	Chr5:103136715-103137313 (-)
CAST/EiJ	ENSTCUG00005033384	lncRNA gene	Chr5:102957844-102958437 (-)
CBA/J	ENSMUSG00210046019	lncRNA gene	Chr5:104512785-104513378 (-)
DBA/2J	ENSMUSG00185049418	lncRNA gene	Chr5:107529492-107530085 (-)
FVB/NJ	ENSMUSG00205053116	lncRNA gene	Chr5:103412564-103413157 (-)
JF1/MsJ	ENSUMUG00000018879	lncRNA gene	Chr5:110386838-110387431 (-)
LP/J	ENSMUSG00230049743	lncRNA gene	Chr5:111679928-111680521 (-)
NOD/ShiLtJ	ENSMUSG00190049410	lncRNA gene	Chr5:103448913-103449506 (-)
NZO/HlLtJ	ENSMUSG00225025933	lncRNA gene	Chr5:119301782-119302375 (-)
PWK/PhJ	ENSLUMG00010039812	lncRNA gene	Chr5:102303057-102303650 (-)
SPRET/EiJ	ENSMSPG00010048284	lncRNA gene	Chr5:105548595-105549188 (-)
WSB/EiJ	ENSIUOG00005046337	lncRNA gene	Chr5:106152620-106153213 (-)

Homology

• Gene Tree
  5930411N13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 5930411N13Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000104970 (Evidence)
• NCBI Gene
  118568795

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104970	Ensembl Gene Model | MGI Sequence Detail	3809	C57BL/6J
transcript	ENSMUST00000198052	Ensembl | MGI Sequence Detail	602	Not Applicable
polypeptide	Q3UYZ3	UniProt | EBI | MGI Sequence Detail	175	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:5663274

References

• Summaries
  All 18

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for 5930411N13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52497	Chr5:110378726-110378785 (-)	311 bp