Gm10564 Gene Detail

Summary

• Symbol
  Gm10564
• Name
  predicted gene 10564

• Feature Type
  lncRNA gene
• IDs
  MGI:3704240
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:155126503-155129879 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 86.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704240	lncRNA gene	Chr4:155126503-155129879 (+)
129S1/SvImJ	ENSMUSG00200019902	lncRNA gene	Chr4:146180039-146183416 (+)
A/J	ENSMUSG00195020394	lncRNA gene	Chr4:147846015-147849392 (+)
AKR/J	ENSMUSG00220028155	lncRNA gene	Chr4:147421496-147424873 (+)
BALB/cJ	ENSMUSG00180002628	lncRNA gene	Chr4:145495224-145498607 (+)
C3H/HeJ	ENSMUSG00175019526	lncRNA gene	Chr4:148801339-148804716 (+)
C57BL/6NJ	ENSMUSG00215026242	lncRNA gene	Chr4:147647496-147650873 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003616	antisense lncRNA gene	Chr4:144948224-144951636 (+)
CAST/EiJ	ENSTCUG00005035064	lncRNA gene	Chr4:151507264-151510635 (+)
CBA/J	ENSMUSG00210006073	lncRNA gene	Chr4:147459659-147463036 (+)
DBA/2J	ENSMUSG00185017181	lncRNA gene	Chr4:151017254-151020631 (+)
FVB/NJ	ENSMUSG00205021603	lncRNA gene	Chr4:145913421-145916798 (+)
JF1/MsJ	ENSUMUG00000000405	lncRNA gene	Chr4:154049702-154053094 (+)
LP/J	ENSMUSG00230026217	lncRNA gene	Chr4:157743181-157746564 (+)
NOD/ShiLtJ	ENSMUSG00190004197	lncRNA gene	Chr4:147117070-147120447 (+)
NZO/HlLtJ	ENSMUSG00225024636	lncRNA gene	Chr4:161739782-161743165 (+)
PWK/PhJ	ENSLUMG00010027699	lncRNA gene	Chr4:146306422-146309804 (+)
SPRET/EiJ	ENSMSPG00010026395	lncRNA gene	Chr4:148246342-148249742 (+)
WSB/EiJ	ENSIUOG00005006915	lncRNA gene	Chr4:145328337-145331714 (+)

Homology

• Gene Tree
  Gm10564
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Gm10564
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000073686 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073686	Ensembl Gene Model | MGI Sequence Detail	3377	C57BL/6J
transcript	ENSMUST00000097750	Ensembl | MGI Sequence Detail	3113	Not Applicable
polypeptide	Q3UN64	UniProt | EBI | MGI Sequence Detail	222	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16