4921514A10Rik Gene Detail

Summary

• Symbol
  4921514A10Rik
• Name
  RIKEN cDNA 4921514A10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3704238
  NCBI Gene: 100038750
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:140842971-140845398 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 73.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704238	lncRNA gene	Chr4:140842971-140845398 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003985	antisense lncRNA gene	Chr4:144132444-144134911 (+)
A/J	MGP_AJ_G0003966	antisense lncRNA gene	Chr4:137877445-137879872 (+)
AKR/J	MGP_AKRJ_G0003943	antisense lncRNA gene	Chr4:141849052-141851479 (+)
BALB/cJ	MGP_BALBcJ_G0003952	antisense lncRNA gene	Chr4:138566687-138569114 (+)
C3H/HeJ	MGP_C3HHeJ_G0003899	antisense lncRNA gene	Chr4:142233456-142235883 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004100	antisense lncRNA gene	Chr4:149178216-149180643 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003862	antisense lncRNA gene	Chr4:140487654-140490067 (+)
CBA/J	MGP_CBAJ_G0003892	antisense lncRNA gene	Chr4:153475956-153478383 (+)
DBA/2J	MGP_DBA2J_G0003908	antisense lncRNA gene	Chr4:138272850-138275317 (+)
FVB/NJ	MGP_FVBNJ_G0003927	antisense lncRNA gene	Chr4:137377789-137380256 (+)
LP/J	MGP_LPJ_G0003988	antisense lncRNA gene	Chr4:144154794-144157261 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003915	antisense lncRNA gene	Chr4:157330297-157332764 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004095	antisense lncRNA gene	Chr4:142383359-142385826 (+)
PWK/PhJ	MGP_PWKPhJ_G0003816	antisense lncRNA gene	Chr4:135160295-135162762 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003762	antisense lncRNA gene	Chr4:138202341-138204772 (+)
WSB/EiJ	MGP_WSBEiJ_G0003898	antisense lncRNA gene	Chr4:142665138-142667601 (+)

Homology

• Gene Tree
  4921514A10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  3 involving 4921514A10Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• UniProt
  1

• Ensembl
  ENSMUSG00000097620 (Evidence)
• NCBI Gene
  100038750

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097620	Ensembl Gene Model | MGI Sequence Detail	2428	C57BL/6J
transcript	ENSMUST00000187076	Ensembl | MGI Sequence Detail	2116	Not Applicable
polypeptide	Q3V164	UniProt | EBI | MGI Sequence Detail	170	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8