Gm12945 Gene Detail

Summary

• Symbol
  Gm12945
• Name
  predicted gene 12945
• Synonyms
  ENSMUSG00000073756

• Feature Type
  lncRNA gene
• IDs
  MGI:3704237
  NCBI Gene: 100048926
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:126217392-126219030 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 60.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704237	lncRNA gene	Chr4:126217392-126219030 (+)
129S1/SvImJ	ENSMUSG00200014709	lncRNA gene	Chr4:119655930-119657567 (+)
A/J	ENSMUSG00195034775	lncRNA gene	Chr4:120991965-120993601 (+)
AKR/J	ENSMUSG00220023292	lncRNA gene	Chr4:119971570-119973208 (+)
BALB/cJ	ENSMUSG00180046372	lncRNA gene	Chr4:118630076-118631714 (+)
C3H/HeJ	ENSMUSG00175027500	lncRNA gene	Chr4:119642822-119644460 (+)
C57BL/6NJ	ENSMUSG00215040392	lncRNA gene	Chr4:121135126-121136764 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013703	unclassified non-coding RNA gene	Chr4:116107727-116109327 (+)
CAST/EiJ	ENSTCUG00005046239	lncRNA gene	Chr4:120514477-120516115 (+)
CBA/J	ENSMUSG00210052637	lncRNA gene	Chr4:119271736-119273374 (+)
DBA/2J	ENSMUSG00185048076	lncRNA gene	Chr4:120804340-120805978 (+)
FVB/NJ	ENSMUSG00205029207	lncRNA gene	Chr4:119012271-119013902 (+)
JF1/MsJ	ENSUMUG00000023941	lncRNA gene	Chr4:121442576-121444202 (+)
LP/J	ENSMUSG00230039030	lncRNA gene	Chr4:124593606-124595243 (+)
NOD/ShiLtJ	ENSMUSG00190046616	lncRNA gene	Chr4:119011820-119013451 (+)
NZO/HlLtJ	ENSMUSG00225016111	lncRNA gene	Chr4:130500723-130502361 (+)
PWK/PhJ	ENSLUMG00010048137	lncRNA gene	Chr4:118477796-118479420 (+)
SPRET/EiJ	ENSMSPG00010042609	lncRNA gene	Chr4:120538754-120540386 (+)
WSB/EiJ	ENSIUOG00005048253	lncRNA gene	Chr4:118878577-118880215 (+)

Homology

• Gene Tree
  Gm12945
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12945
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000087394 (Evidence)
• NCBI Gene
  100048926

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087394	Ensembl Gene Model | MGI Sequence Detail	1639	C57BL/6J
transcript	ENSMUST00000140080	Ensembl | MGI Sequence Detail	674	Not Applicable
polypeptide	Q3UIM7	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12