4731419I09Rik Gene Detail

Summary

• Symbol
  4731419I09Rik
• Name
  RIKEN cDNA 4731419I09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3704222
  NCBI Gene: 100048897
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:89245157-89255138 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 39.07 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704222	lncRNA gene	Chr3:89245157-89255138 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003777	antisense lncRNA gene	Chr3:89548238-89558164 (+)
A/J	MGP_AJ_G0003757	antisense lncRNA gene	Chr3:86584265-86594245 (+)
AKR/J	MGP_AKRJ_G0003734	antisense lncRNA gene	Chr3:88675512-88685493 (+)
BALB/cJ	MGP_BALBcJ_G0003746	antisense lncRNA gene	Chr3:86550412-86560393 (+)
C3H/HeJ	MGP_C3HHeJ_G0003692	antisense lncRNA gene	Chr3:88880640-88891579 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003888	antisense lncRNA gene	Chr3:92934594-92945170 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003391	antisense lncRNA gene	Chr3:82068250-82078302 (+)
CAST/EiJ	MGP_CASTEiJ_G0003656	antisense lncRNA gene	Chr3:89236497-89246472 (+)
CBA/J	MGP_CBAJ_G0003688	antisense lncRNA gene	Chr3:96113924-96123850 (+)
DBA/2J	MGP_DBA2J_G0003698	antisense lncRNA gene	Chr3:85962071-85972052 (+)
FVB/NJ	MGP_FVBNJ_G0003719	antisense lncRNA gene	Chr3:84304276-84314257 (+)
LP/J	MGP_LPJ_G0003778	antisense lncRNA gene	Chr3:90627027-90637036 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003707	antisense lncRNA gene	Chr3:102330538-102340523 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003887	antisense lncRNA gene	Chr3:88430472-88442337 (+)
PWK/PhJ	MGP_PWKPhJ_G0003613	antisense lncRNA gene	Chr3:85838827-85849127 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003555	antisense lncRNA gene	Chr3:87598516-87608746 (+)
WSB/EiJ	MGP_WSBEiJ_G0003692	antisense lncRNA gene	Chr3:88825005-88835012 (+)

Homology

• Gene Tree
  4731419I09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4731419I09Rik
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000097004 (Evidence)
• NCBI Gene
  100048897

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097004	Ensembl Gene Model | MGI Sequence Detail	9982	C57BL/6J
transcript	ENSMUST00000180791	Ensembl | MGI Sequence Detail	2820	Not Applicable
polypeptide	Q3V1I1	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for 4731419I09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30091	Chr3:89246947-89246956 (+)	1,795 bp