4731419I09Rik Gene Detail

Summary

• Symbol
  4731419I09Rik
• Name
  RIKEN cDNA 4731419I09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3704222
  NCBI Gene: 100048897
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:89245157-89255138 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 39.07 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704222	lncRNA gene	Chr3:89245157-89255138 (+)
129S1/SvImJ	ENSMUSG00200040070	lncRNA gene	Chr3:86100404-86110387 (+)
129S1/SvImJ	ENSMUSG00200037408	protein coding gene	Chr3:86100386-86108251 (+)
A/J	ENSMUSG00195050585	protein coding gene	Chr3:86115394-86123259 (+)
A/J	ENSMUSG00195053671	lncRNA gene	Chr3:86115412-86125396 (+)
AKR/J	ENSMUSG00220048391	protein coding gene	Chr3:86069965-86077828 (+)
AKR/J	ENSMUSG00220052159	lncRNA gene	Chr3:86069983-86079964 (+)
BALB/cJ	ENSMUSG00180046486	protein coding gene	Chr3:86197447-86205310 (+)
BALB/cJ	ENSMUSG00180049741	lncRNA gene	Chr3:86197465-86207446 (+)
C3H/HeJ	ENSMUSG00175047864	lncRNA gene	Chr3:86048044-86058027 (+)
C3H/HeJ	ENSMUSG00175042640	protein coding gene	Chr3:86048026-86055891 (+)
C57BL/6NJ	ENSMUSG00215047999	protein coding gene	Chr3:86488135-86496000 (+)
C57BL/6NJ	ENSMUSG00215050359	lncRNA gene	Chr3:86488153-86498137 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003391	antisense lncRNA gene	Chr3:82068250-82078302 (+)
CAST/EiJ	ENSTCUG00005049299	lncRNA gene	Chr3:85563692-85573667 (+)
CBA/J	ENSMUSG00210048329	lncRNA gene	Chr3:86185689-86195670 (+)
CBA/J	ENSMUSG00210037625	protein coding gene	Chr3:86185671-86193534 (+)
DBA/2J	ENSMUSG00185053031	lncRNA gene	Chr3:86285928-86295909 (+)
DBA/2J	ENSMUSG00185046675	protein coding gene	Chr3:86285910-86293773 (+)
FVB/NJ	ENSMUSG00205051253	lncRNA gene	Chr3:85109649-85119630 (+)
FVB/NJ	ENSMUSG00205047313	protein coding gene	Chr3:85109631-85117494 (+)
JF1/MsJ	ENSUMUG00000051848	lncRNA gene	Chr3:85894529-85904524 (+)
LP/J	ENSMUSG00230031547	protein coding gene	Chr3:88321696-88329559 (+)
LP/J	ENSMUSG00230036539	lncRNA gene	Chr3:88321714-88331695 (+)
NOD/ShiLtJ	ENSMUSG00190049985	lncRNA gene	Chr3:86570699-86580682 (+)
NOD/ShiLtJ	ENSMUSG00190033357	protein coding gene	Chr3:86570681-86578544 (+)
NZO/HlLtJ	ENSMUSG00225007734	lncRNA gene	Chr3:91077000-91086981 (+)
NZO/HlLtJ	ENSMUSG00225007511	protein coding gene	Chr3:91076982-91084845 (+)
PWK/PhJ	ENSLUMG00010052405	lncRNA gene	Chr3:85936435-85946379 (+)
SPRET/EiJ	ENSMSPG00010051067	lncRNA gene	Chr3:86798723-86808963 (+)
WSB/EiJ	ENSIUOG00005050693	lncRNA gene	Chr3:86592198-86602179 (+)

Homology

• Gene Tree
  4731419I09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4731419I09Rik
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• UniProt
  1

• Ensembl
  ENSMUSG00000097004 (Evidence)
• NCBI Gene
  100048897

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097004	Ensembl Gene Model | MGI Sequence Detail	9982	C57BL/6J
transcript	ENSMUST00000180791	Ensembl | MGI Sequence Detail	2820	Not Applicable
polypeptide	Q3V1I1	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for 4731419I09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30091	Chr3:89246947-89246956 (+)	1,795 bp