Gm9790 Pseudogene Detail

Summary

• Symbol
  Gm9790
• Name
  predicted gene 9790

• Feature Type
  pseudogene
• IDs
  MGI:3704221
  NCBI Gene: 100042265
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:85823090-85823377 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 37.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704221	pseudogene	Chr3:85823015-85823476 (+)
129S1/SvImJ	ENSMUSG00200039821	pseudogene	Chr3:82659537-82659824 (+)
A/J	ENSMUSG00195053773	pseudogene	Chr3:82685969-82686256 (+)
AKR/J	ENSMUSG00220051888	pseudogene	Chr3:82631382-82631669 (+)
BALB/cJ	ENSMUSG00180049362	pseudogene	Chr3:82800952-82801239 (+)
C3H/HeJ	ENSMUSG00175047604	pseudogene	Chr3:82612753-82613040 (+)
C57BL/6NJ	ENSMUSG00215050304	pseudogene	Chr3:83065045-83065332 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012780	pseudogene	ChrX:90735671-90735938 (+)
CAST/EiJ	ENSTCUG00005001895	pseudogene	Chr3:82153600-82153887 (+)
CBA/J	ENSMUSG00210048540	pseudogene	Chr3:82757000-82757287 (+)
DBA/2J	ENSMUSG00185053134	pseudogene	Chr3:82889845-82890132 (+)
FVB/NJ	ENSMUSG00205006493	pseudogene	Chr3:81687696-81687983 (+)
JF1/MsJ	ENSUMUG00000051637	pseudogene	Chr3:82453156-82453443 (+)
LP/J	ENSMUSG00230037146	pseudogene	Chr3:84879958-84880245 (+)
NOD/ShiLtJ	ENSMUSG00190049574	pseudogene	Chr3:83147295-83147582 (+)
NZO/HlLtJ	ENSMUSG00225008110	pseudogene	Chr3:87615233-87615520 (+)
PWK/PhJ	ENSLUMG00010010300	pseudogene	Chr8:42332154-42332441 (-)
PWK/PhJ	ENSLUMG00010051985	pseudogene	Chr3:82541358-82541645 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051123	pseudogene	Chr3:83136957-83137244 (+)

Homology

• Gene Tree
  Gm9790
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9790
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000044330 (Evidence)
• NCBI Gene
  100042265

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000044330	Ensembl Gene Model | MGI Sequence Detail	288	C57BL/6J
transcript	ENSMUST00000054148	Ensembl | MGI Sequence Detail	288	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9790:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29769	Chr3:85823010-85823042 (+)	-64 bp