Gm10762 MGI Mouse Gene Detail - MGI:3704209

Symbol

Gm10762
Name

predicted gene 10762

Feature Type

lncRNA gene
IDs

MGI:3704209
Alliance

genome feature page
Transcription Start Sites

4 TSS

Sequence Map

Chr2:128807425-128809964 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 2, 62.63 cM
Mapping Data

1 experiment

SNPs within 2kb

113 from dbSNP Build 142
Strain Annotations

30

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704209	lncRNA gene	Chr2:128807425-128809964 (-)
129S1/SvImJ	ENSMUSG00200049703	lncRNA gene	Chr2:125853421-125855960 (-)
129S1/SvImJ	ENSMUSG00200043696	protein coding gene	Chr2:125853003-125856162 (-)
A/J	ENSMUSG00195030635	lncRNA gene	Chr2:125881669-125884208 (-)
A/J	ENSMUSG00195026640	protein coding gene	Chr2:125881251-125884410 (-)
AKR/J	ENSMUSG00220043609	protein coding gene	Chr2:125646892-125650051 (-)
AKR/J	ENSMUSG00220045092	lncRNA gene	Chr2:125647310-125649849 (-)
BALB/cJ	ENSMUSG00180044542	protein coding gene	Chr2:125680702-125683846 (-)
BALB/cJ	ENSMUSG00180050561	lncRNA gene	Chr2:125681120-125683667 (-)
C3H/HeJ	ENSMUSG00175048795	lncRNA gene	Chr2:126219228-126221775 (-)
C3H/HeJ	ENSMUSG00175045162	protein coding gene	Chr2:126218810-126221954 (-)
C57BL/6NJ	ENSMUSG00215015830	protein coding gene	Chr2:125729471-125732630 (-)
C57BL/6NJ	ENSMUSG00215034932	lncRNA gene	Chr2:125729889-125732428 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0024277	protein coding gene	Chr2:121794730-121795902 (-)
CAST/EiJ	ENSTCUG00005039946	lncRNA gene	Chr2:125024445-125027846 (-)
CBA/J	ENSMUSG00210030143	protein coding gene	Chr2:126076555-126079699 (-)
CBA/J	ENSMUSG00210035852	lncRNA gene	Chr2:126076973-126079520 (-)
DBA/2J	ENSMUSG00185036184	lncRNA gene	Chr2:125721837-125724398 (-)
DBA/2J	ENSMUSG00185030821	protein coding gene	Chr2:125721420-125732101 (-)
FVB/NJ	ENSMUSG00205023734	protein coding gene	Chr2:124901335-124904494 (-)
FVB/NJ	ENSMUSG00205044101	lncRNA gene	Chr2:124901753-124904292 (-)
JF1/MsJ	ENSUMUG00000029171	lncRNA gene	Chr2:125577267-125579826 (-)
LP/J	ENSMUSG00230033609	protein coding gene	Chr2:127488311-127491470 (-)
LP/J	ENSMUSG00230039066	lncRNA gene	Chr2:127488729-127491268 (-)
NOD/ShiLtJ	ENSMUSG00190015307	lncRNA gene	Chr2:125838909-125841453 (-)
NZO/HlLtJ	ENSMUSG00225027054	protein coding gene	Chr2:135397196-135400355 (-)
NZO/HlLtJ	ENSMUSG00225027669	lncRNA gene	Chr2:135397614-135400153 (-)
PWK/PhJ	ENSLUMG00010042482	lncRNA gene	Chr2:125487252-125489805 (-)
SPRET/EiJ	ENSMSPG00010032326	lncRNA gene	Chr2:127880155-127882699 (-)
WSB/EiJ	ENSIUOG00005045712	lncRNA gene	Chr2:125663895-125667285 (-)

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Gene Tree

Gm10762

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

6
Chemically induced (other)

1
Gene trapped

4
Radiation induced

1
Genomic Mutations

2 involving Gm10762
Find Mice (IMSR)

5 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

2

Tissue x Stage Matrix

Other Mouse Links

Expression Atlas

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All Sequences

36
UniProt

1

Ensembl

ENSMUSG00000074807 (Evidence)

			Length	Strain/Species	Flank
genomic	ENSMUSG00000074807	Ensembl Gene Model \| MGI Sequence Detail	2540	C57BL/6J	± kb
transcript	ENSMUST00000238197	Ensembl \| MGI Sequence Detail	2540	Not Applicable
polypeptide	Q9CZN6	UniProt \| EBI \| MGI Sequence Detail	115	Not Applicable

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UniProt

1 Sequence

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All nucleic 2

cDNA 2

Microarray probesets 2

Summaries

All 11

Phenotypes 4
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm10762:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26182	Chr2:128810145-128810161 (-)	-189 bp
Tssr26181	Chr2:128809963-128809984 (-)	-10 bp
Tssr26180	Chr2:128809916-128809950 (-)	31 bp
Tssr26179	Chr2:128809153-128809182 (-)	796 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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