Gm9821 Gene Detail

Summary

• Symbol
  Gm9821
• Name
  predicted gene 9821

• Feature Type
  lncRNA gene
• IDs
  MGI:3704208
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:91776048-91779033 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704208	lncRNA gene	Chr2:91776048-91779033 (+)
129S1/SvImJ	ENSMUSG00200054069	lncRNA gene	Chr2:88691866-88694851 (+)
A/J	ENSMUSG00195053869	lncRNA gene	Chr2:88826995-88829998 (+)
AKR/J	ENSMUSG00220052869	lncRNA gene	Chr2:88621767-88624752 (+)
BALB/cJ	ENSMUSG00180054943	lncRNA gene	Chr2:88725948-88728945 (+)
C3H/HeJ	ENSMUSG00175054300	lncRNA gene	Chr2:88987738-88990723 (+)
C57BL/6NJ	ENSMUSG00215053902	lncRNA gene	Chr2:88819097-88822082 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023973	protein coding gene	Chr2:86064577-86066528 (+)
CAST/EiJ	ENSTCUG00005052616	lncRNA gene	Chr2:88225001-88228045 (+)
CBA/J	ENSMUSG00210041987	lncRNA gene	Chr2:88998836-89001821 (+)
DBA/2J	ENSMUSG00185057190	lncRNA gene	Chr2:88722293-88725292 (+)
FVB/NJ	ENSMUSG00205052661	lncRNA gene	Chr2:88009071-88012054 (+)
JF1/MsJ	ENSUMUG00000034359	lncRNA gene	Chr2:88541139-88544155 (+)
LP/J	ENSMUSG00230046225	lncRNA gene	Chr2:90472909-90475906 (+)
NOD/ShiLtJ	ENSMUSG00190051341	lncRNA gene	Chr2:88801046-88804043 (+)
NZO/HlLtJ	ENSMUSG00225053908	lncRNA gene	Chr2:98392398-98395383 (+)
PWK/PhJ	ENSLUMG00010052446	lncRNA gene	Chr2:88518132-88521132 (+)
SPRET/EiJ	ENSMSPG00010052123	lncRNA gene	Chr2:90474599-90477654 (+)
WSB/EiJ	ENSIUOG00005053478	lncRNA gene	Chr2:88527000-88529987 (+)

Homology

• Gene Tree
  Gm9821
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm9821
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000095332 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095332	Ensembl Gene Model | MGI Sequence Detail	2986	C57BL/6J
transcript	ENSMUST00000238356	Ensembl | MGI Sequence Detail	2032	Not Applicable
polypeptide	Q8K076	UniProt | EBI | MGI Sequence Detail	103	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 13

  Phenotypes 8
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087