A230020J21Rik Gene Detail

Summary

• Symbol
  A230020J21Rik
• Name
  RIKEN cDNA A230020J21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3704207
  NCBI Gene: 100125339
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:190757548-190761978 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 96.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704207	lncRNA gene	Chr1:190757547-190761978 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002824	antisense lncRNA gene	Chr1:198042499-198046913 (+)
A/J	MGP_AJ_G0002801	antisense lncRNA gene	Chr1:189929198-189935124 (+)
AKR/J	MGP_AKRJ_G0002782	antisense lncRNA gene	Chr1:195547635-195552062 (+)
BALB/cJ	MGP_BALBcJ_G0002788	antisense lncRNA gene	Chr1:190602587-190607013 (+)
C3H/HeJ	MGP_C3HHeJ_G0002746	antisense lncRNA gene	Chr1:196395866-196400345 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002930	antisense lncRNA gene	Chr1:204350139-204355832 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002477	antisense lncRNA gene	Chr1:180829789-180833998 (+)
CAST/EiJ	MGP_CASTEiJ_G0002718	antisense lncRNA gene	Chr1:195985936-195990331 (+)
CBA/J	MGP_CBAJ_G0002741	antisense lncRNA gene	Chr1:211918311-211922724 (+)
DBA/2J	MGP_DBA2J_G0002748	antisense lncRNA gene	Chr1:188650577-188654902 (+)
FVB/NJ	MGP_FVBNJ_G0002768	antisense lncRNA gene	Chr1:186775359-186779786 (+)
LP/J	MGP_LPJ_G0002824	antisense lncRNA gene	Chr1:199217123-199221550 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002758	antisense lncRNA gene	Chr1:218627032-218631445 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002935	antisense lncRNA gene	Chr1:195434563-195438975 (+)
PWK/PhJ	MGP_PWKPhJ_G0002676	antisense lncRNA gene	Chr1:187929843-187934410 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002626	antisense lncRNA gene	Chr1:194431956-194436725 (+)
WSB/EiJ	MGP_WSBEiJ_G0002747	antisense lncRNA gene	Chr1:195650254-195654682 (+)

Homology

• Gene Tree
  A230020J21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097845 (Evidence)
• NCBI Gene
  100125339

Representative Sequences			Length	Strain/Species
genomic	100125339	NCBI Gene Model | MGI Sequence Detail	4431	C57BL/6J
transcript	NR_027298	RefSeq | MGI Sequence Detail	1649	C57BL/6
polypeptide	Q8CAM2	UniProt | EBI | MGI Sequence Detail	278	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;