Csnk2a1-ps3 Pseudogene Detail

Summary

• Symbol
  Csnk2a1-ps3
• Name
  casein kinase 2, alpha 1 polypeptide, pseudogene 3
• Synonyms
  Csnk2a1-rs3, Csnk2a3, Gm10031

• Feature Type
  pseudogene
• IDs
  MGI:3704198
  NCBI Gene: 100039026
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:156351663-156353140 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1,
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704198	pseudogene	Chr1:156351582-156354214 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215041902	pseudogene	Chr1:153337750-153340386 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032948	protein coding gene	ChrX:10113433-10114969 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230017107	pseudogene	Chr1:157182275-157184909 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010051644	pseudogene	Chr19:9531307-9534752 (+)
WSB/EiJ	ENSIUOG00005015583	pseudogene	Chr1:152771225-152773860 (+)

Homology

• Gene Tree
  Csnk2a1-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  3
• Genomic Mutations
  2 involving Csnk2a1-ps3
• Find Mice (IMSR)
  12 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000101523 (Evidence)
• NCBI Gene
  100039026

Representative Sequences			Length	Strain/Species
genomic	100039026	NCBI Gene Model | MGI Sequence Detail	1478	C57BL/6J
transcript	NR_171044	RefSeq | MGI Sequence Detail	1478	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-2204, MGI:6295941, MGI:6456206, MGI:88546

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:1588 Boldyreff B, et al., Identification of four genomic loci highly related to casein-kinase-2-alpha cDNA and characterization of a casein kinase-2-alpha pseudogene within the mouse genome. Biochem Biophys Res Commun. 1992 Jul 31;186(2):723-30
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Csnk2a1-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9569	Chr1:156351644-156351677 (+)	-2 bp