E330011M16Rik Gene Detail

Summary

• Symbol
  E330011M16Rik
• Name
  RIKEN cDNA E330011M16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3704186
  NCBI Gene: 100313512
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:55090478-55092271 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704186	lncRNA gene	Chr1:55090478-55092271 (-)
129S1/SvImJ	ENSMUSG00200018688	unclassified gene	Chr1:52565860-52567653 (-)
A/J	ENSMUSG00195030745	unclassified gene	Chr1:52122603-52124396 (-)
AKR/J	ENSMUSG00220041527	unclassified gene	Chr1:52216121-52217922 (-)
BALB/cJ	ENSMUSG00180014190	unclassified gene	Chr1:52391643-52393444 (-)
C3H/HeJ	ENSMUSG00175001243	unclassified gene	Chr1:52497437-52499230 (-)
C57BL/6NJ	ENSMUSG00215036510	unclassified gene	Chr1:52419503-52421296 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000281	unclassified gene	Chr1:48953777-48955561 (-)
CAST/EiJ	ENSTCUG00005013702	unclassified gene	Chr1:52322918-52324709 (-)
CBA/J	ENSMUSG00210054167	unclassified gene	Chr1:52184296-52186089 (-)
DBA/2J	ENSMUSG00185055021	unclassified gene	Chr1:53303900-53305693 (-)
FVB/NJ	ENSMUSG00205022911	unclassified gene	Chr1:52146006-52147799 (-)
JF1/MsJ	ENSUMUG00000046708	unclassified gene	Chr1:52268620-52270417 (-)
LP/J	ENSMUSG00230029232	unclassified gene	Chr1:53313020-53314813 (-)
NOD/ShiLtJ	ENSMUSG00190043724	unclassified gene	Chr1:52330420-52332214 (-)
NZO/HlLtJ	ENSMUSG00225009664	unclassified gene	Chr1:56514869-56516662 (-)
PWK/PhJ	ENSLUMG00010025428	unclassified gene	Chr1:51827378-51829176 (-)
SPRET/EiJ	ENSMSPG00010028166	unclassified gene	Chr1:53604718-53606520 (-)
WSB/EiJ	ENSIUOG00005021897	unclassified gene	Chr1:51986278-51988071 (-)

Homology

• Gene Tree
  E330011M16Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000103030 (Evidence)
• NCBI Gene
  100313512

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103030	Ensembl Gene Model | MGI Sequence Detail	1794	C57BL/6J
transcript	AK143349	GenBank | ENA | DDBJ | MGI Sequence Detail	1795	C57BL/6J
polypeptide	Q3UPP4	UniProt | EBI | MGI Sequence Detail	70	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for E330011M16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11710	Chr1:55091757-55091781 (-)	502 bp