Gvin-ps5 Pseudogene Detail

Summary

• Symbol
  Gvin-ps5
• Name
  GTPase, very large interferon inducible, pseudogene 5
• Synonyms
  Gm21911, Gm8989

• Feature Type
  pseudogene
• IDs
  MGI:3704114
  NCBI Gene: 668128
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:105921603-105923735 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 55.98 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704114	pseudogene	Chr7:105921603-105929895 (-)
129S1/SvImJ	ENSMUSG00200034068	pseudogene	Chr7:92470544-92477818 (-)
A/J	ENSMUSG00195054721	pseudogene	Chr7:96973158-96980432 (-)
AKR/J	ENSMUSG00220051929	pseudogene	Chr7:90350404-90357678 (-)
BALB/cJ	ENSMUSG00180044676	pseudogene	Chr7:93652657-93659931 (-)
C3H/HeJ	ENSMUSG00175052526	pseudogene	Chr7:94295761-94303035 (-)
C57BL/6NJ	ENSMUSG00215051696	pseudogene	Chr7:93565716-93573007 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053132	pseudogene	Chr7:96813948-96821231 (-)
CBA/J	ENSMUSG00210048099	pseudogene	Chr7:94121252-94128526 (-)
DBA/2J	ENSMUSG00185057057	pseudogene	Chr7:98473690-98480964 (-)
FVB/NJ	ENSMUSG00205048078	pseudogene	Chr7:93940384-93947667 (-)
JF1/MsJ	ENSUMUG00000049801	pseudogene	Chr7:103386599-103393882 (-)
LP/J	ENSMUSG00230048762	pseudogene	Chr7:104575255-104582529 (-)
NOD/ShiLtJ	ENSMUSG00190048206	pseudogene	Chr7:94305059-94312347 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010041427	pseudogene	Chr7:92635084-92642383 (-)
SPRET/EiJ	ENSMSPG00010042248	pseudogene	Chr7:93726242-93733525 (-)
WSB/EiJ	ENSIUOG00005049940	pseudogene	Chr7:94529969-94537252 (-)

Homology

• Gene Tree
  Gvin-ps5
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gvin-ps5
• Incidental Mutations
  APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000095457 (Evidence)
• NCBI Gene
  668128

Representative Sequences			Length	Strain/Species
genomic	668128	NCBI Gene Model | MGI Sequence Detail	2133	C57BL/6J
transcript	NR_030720	RefSeq | MGI Sequence Detail	2133	C57BL/6
polypeptide	Q9D303	UniProt | EBI | MGI Sequence Detail	353	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR060179 Interferon-induced very large GTPase 1, C-terminal

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5434075, MGI:6441891

References

• Summaries
  All 17

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67