Gm13594 Gene Detail

Summary

• Symbol
  Gm13594
• Name
  predicted gene 13594

• Feature Type
  lncRNA gene
• IDs
  MGI:3702953
  NCBI Gene: 108168763
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:65068183-65071191 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 38.42 cM

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702953	lncRNA gene	Chr2:65063826-65071191 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003570	antisense lncRNA gene	Chr2:65028754-65029673 (+)
A/J	MGP_AJ_G0003551	antisense lncRNA gene	Chr2:62531678-62532597 (+)
AKR/J	MGP_AKRJ_G0003529	antisense lncRNA gene	Chr2:64199371-64200290 (+)
BALB/cJ	MGP_BALBcJ_G0003540	antisense lncRNA gene	Chr2:62679319-62680238 (+)
C3H/HeJ	MGP_C3HHeJ_G0003487	antisense lncRNA gene	Chr2:64367146-64368065 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003678	antisense lncRNA gene	Chr2:66948973-66949892 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003187	antisense lncRNA gene	Chr2:59899922-59900847 (+)
CAST/EiJ	MGP_CASTEiJ_G0003450	antisense lncRNA gene	Chr2:64413643-64414562 (+)
CBA/J	MGP_CBAJ_G0003484	antisense lncRNA gene	Chr2:69482478-69483397 (+)
DBA/2J	MGP_DBA2J_G0003492	antisense lncRNA gene	Chr2:62154123-62155042 (+)
FVB/NJ	MGP_FVBNJ_G0003512	antisense lncRNA gene	Chr2:61575922-61576841 (+)
LP/J	MGP_LPJ_G0003565	antisense lncRNA gene	Chr2:64845343-64846262 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003500	antisense lncRNA gene	Chr2:71428629-71429548 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003681	antisense lncRNA gene	Chr2:64256734-64257653 (+)
PWK/PhJ	MGP_PWKPhJ_G0003405	antisense lncRNA gene	Chr2:61975695-61976614 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003350	antisense lncRNA gene	Chr2:64418219-64419138 (+)
WSB/EiJ	MGP_WSBEiJ_G0003485	antisense lncRNA gene	Chr2:64620300-64621219 (+)

Homology

• Gene Tree
  Gm13594
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13594
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000086881 (Evidence)
• NCBI Gene
  108168763

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086881	Ensembl Gene Model | MGI Sequence Detail	3009	C57BL/6J
transcript	ENSMUST00000243428	Ensembl | MGI Sequence Detail	1586	Not Applicable
polypeptide	Q9CVJ9	UniProt | EBI | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm13594:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17977	Chr2:65068177-65068190 (+)	1 bp
Tssr17978	Chr2:65069077-65069106 (+)	909 bp
Tssr17979	Chr2:65069128-65069148 (+)	955 bp