Gm13594 Gene Detail

Summary

• Symbol
  Gm13594
• Name
  predicted gene 13594

• Feature Type
  lncRNA gene
• IDs
  MGI:3702953
  NCBI Gene: 108168763
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:65068177-65071191 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 38.42 cM

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702953	lncRNA gene	Chr2:65063826-65071191 (+)
129S1/SvImJ	ENSMUSG00200037002	lncRNA gene	Chr2:62137172-62140180 (+)
A/J	ENSMUSG00195022963	lncRNA gene	Chr2:62270726-62273734 (+)
AKR/J	ENSMUSG00220041952	lncRNA gene	Chr2:62223196-62226204 (+)
BALB/cJ	ENSMUSG00180043168	lncRNA gene	Chr2:62216109-62219117 (+)
C3H/HeJ	ENSMUSG00175039520	lncRNA gene	Chr2:62281287-62284295 (+)
C57BL/6NJ	ENSMUSG00215030544	lncRNA gene	Chr2:62161990-62164998 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003187	antisense lncRNA gene	Chr2:59899922-59900847 (+)
CAST/EiJ	ENSTCUG00005009307	lncRNA gene	Chr2:61566305-61569305 (+)
CBA/J	ENSMUSG00210039320	lncRNA gene	Chr2:62318702-62321710 (+)
DBA/2J	ENSMUSG00185041904	lncRNA gene	Chr2:62190295-62193311 (+)
FVB/NJ	ENSMUSG00205038250	lncRNA gene	Chr2:61710308-61713315 (+)
JF1/MsJ	ENSUMUG00000006428	lncRNA gene	Chr2:61860081-61863088 (+)
LP/J	ENSMUSG00230023519	lncRNA gene	Chr2:64023920-64026928 (+)
NOD/ShiLtJ	ENSMUSG00190042870	lncRNA gene	Chr2:62265249-62268256 (+)
NZO/HlLtJ	ENSMUSG00225001040	lncRNA gene	Chr2:71753221-71756229 (+)
PWK/PhJ	ENSLUMG00010036036	lncRNA gene	Chr2:62021383-62024390 (+)
SPRET/EiJ	ENSMSPG00010037142	lncRNA gene	Chr2:63312008-63315006 (+)
WSB/EiJ	ENSIUOG00005019639	lncRNA gene	Chr2:62314777-62317785 (+)

Homology

• Gene Tree
  Gm13594
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13594
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000086881 (Evidence)
• NCBI Gene
  108168763

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086881	Ensembl Gene Model | MGI Sequence Detail	3015	C57BL/6J
transcript	ENSMUST00000243428	Ensembl | MGI Sequence Detail	1592	Not Applicable
polypeptide	Q9CVJ9	UniProt | EBI | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm13594:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17977	Chr2:65068177-65068190 (+)	7 bp
Tssr17978	Chr2:65069077-65069106 (+)	915 bp
Tssr17979	Chr2:65069128-65069148 (+)	961 bp