BC106179 Gene Detail

Summary

• Symbol
  BC106179
• Name
  cDNA sequence BC106179

• Feature Type
  lncRNA gene
• IDs
  MGI:3702726
  NCBI Gene: 320099
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr16:23040274-23044234 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 14.02 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702726	lncRNA gene	Chr16:23034774-23044234 (-)
129S1/SvImJ	ENSMUSG00200048998	lncRNA gene	Chr16:20043272-20048098 (-)
129S1/SvImJ	ENSMUSG00200041065	protein coding gene	Chr16:20044900-20048149 (-)
A/J	ENSMUSG00195028716	protein coding gene	Chr16:19598539-19602656 (-)
A/J	ENSMUSG00195037916	lncRNA gene	Chr16:19597777-19602605 (-)
AKR/J	ENSMUSG00220043627	protein coding gene	Chr16:19917926-19922042 (-)
AKR/J	ENSMUSG00220047162	lncRNA gene	Chr16:19917164-19921991 (-)
BALB/cJ	ENSMUSG00180043170	lncRNA gene	Chr16:19838375-19843201 (-)
BALB/cJ	ENSMUSG00180038593	protein coding gene	Chr16:19839137-19843252 (-)
C3H/HeJ	ENSMUSG00175039724	protein coding gene	Chr16:19984035-19988149 (-)
C3H/HeJ	ENSMUSG00175051459	lncRNA gene	Chr16:19983273-19988098 (-)
C57BL/6NJ	ENSMUSG00215039127	protein coding gene	Chr16:19711245-19715362 (-)
C57BL/6NJ	ENSMUSG00215043411	lncRNA gene	Chr16:19710483-19715311 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020615	protein coding gene	Chr16:20431147-20435657 (-)
CAST/EiJ	ENSTCUG00005036427	lncRNA gene	Chr16:20313655-20318425 (-)
CBA/J	ENSMUSG00210047978	lncRNA gene	Chr16:20004943-20009770 (-)
CBA/J	ENSMUSG00210040486	protein coding gene	Chr16:20005705-20009821 (-)
DBA/2J	ENSMUSG00185036076	lncRNA gene	Chr16:19943749-19948574 (-)
DBA/2J	ENSMUSG00185033152	protein coding gene	Chr16:19944511-19948625 (-)
FVB/NJ	ENSMUSG00205043475	protein coding gene	Chr16:19945180-19949298 (-)
FVB/NJ	ENSMUSG00205048919	lncRNA gene	Chr16:19944418-19949247 (-)
JF1/MsJ	ENSUMUG00000040445	lncRNA gene	Chr16:20165324-20170051 (-)
LP/J	ENSMUSG00230034013	lncRNA gene	Chr16:22522763-22527590 (-)
LP/J	ENSMUSG00230029537	protein coding gene	Chr16:22523525-22527641 (-)
NOD/ShiLtJ	ENSMUSG00190050533	lncRNA gene	Chr16:20085153-20089980 (-)
NOD/ShiLtJ	ENSMUSG00190033686	protein coding gene	Chr16:20085915-20090031 (-)
NZO/HlLtJ	ENSMUSG00225039205	lncRNA gene	Chr16:25773900-25778727 (-)
NZO/HlLtJ	ENSMUSG00225036026	protein coding gene	Chr16:25774662-25778778 (-)
PWK/PhJ	ENSLUMG00010049886	lncRNA gene	Chr16:19989774-19994500 (-)
SPRET/EiJ	ENSMSPG00010046868	lncRNA gene	Chr16:19870003-19874765 (-)
WSB/EiJ	ENSIUOG00005045408	lncRNA gene	Chr16:20189277-20194034 (-)

Homology

• Gene Tree
  BC106179
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000045231 (Evidence)
• NCBI Gene
  320099

Representative Sequences			Length	Strain/Species
genomic	320099	NCBI Gene Model | MGI Sequence Detail	3961	C57BL/6J
transcript	NR_152126	RefSeq | MGI Sequence Detail	2649	C57BL/6
polypeptide	Q8C9L1	UniProt | EBI | MGI Sequence Detail	186	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 11
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for BC106179:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140552	Chr16:23044084-23044097 (-)	143 bp
Tssr140551	Chr16:23044052-23044066 (-)	175 bp
Tssr140550	Chr16:23044018-23044028 (-)	211 bp
Tssr140549	Chr16:23043975-23043990 (-)	251 bp