Gm12992 Gene Detail

Summary

• Symbol
  Gm12992
• Name
  predicted gene 12992

• Feature Type
  lncRNA gene
• IDs
  MGI:3702644
  NCBI Gene: 545681
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:131626789-131647340 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 64.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  619 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702644	lncRNA gene	Chr4:131613380-131647340 (-)
129S1/SvImJ	ENSMUSG00200020964	lncRNA gene	Chr4:125081058-125101483 (-)
A/J	ENSMUSG00195044895	lncRNA gene	Chr4:126405961-126426525 (-)
AKR/J	ENSMUSG00220047489	lncRNA gene	Chr4:125397717-125418281 (-)
BALB/cJ	ENSMUSG00180049560	lncRNA gene	Chr4:124039579-124060143 (-)
C3H/HeJ	ENSMUSG00175047799	lncRNA gene	Chr4:125052004-125072568 (-)
C57BL/6NJ	ENSMUSG00215052285	lncRNA gene	Chr4:126555897-126576461 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013705	unclassified non-coding RNA gene	Chr4:121540333-121561922 (-)
CAST/EiJ	ENSTCUG00005048331	lncRNA gene	Chr4:125945730-125966321 (-)
CBA/J	ENSMUSG00210054027	lncRNA gene	Chr4:124680967-124701526 (-)
DBA/2J	ENSMUSG00185053142	lncRNA gene	Chr4:126213412-126233979 (-)
FVB/NJ	ENSMUSG00205049376	lncRNA gene	Chr4:124454262-124474709 (-)
JF1/MsJ	ENSUMUG00000047542	lncRNA gene	Chr4:126877210-126898037 (-)
LP/J	ENSMUSG00230038796	lncRNA gene	Chr4:130019592-130040011 (-)
NOD/ShiLtJ	ENSMUSG00190048606	lncRNA gene	Chr4:124445725-124466286 (-)
NZO/HlLtJ	ENSMUSG00225026701	lncRNA gene	Chr4:135924159-135944720 (-)
PWK/PhJ	ENSLUMG00010050135	lncRNA gene	Chr4:123898810-123919377 (-)
SPRET/EiJ	ENSMSPG00010046451	lncRNA gene	Chr4:125960758-125981552 (-)
WSB/EiJ	ENSIUOG00005045829	lncRNA gene	Chr4:124332614-124353125 (-)

Homology

• Gene Tree
  Gm12992
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12992
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000085667 (Evidence)
• NCBI Gene
  545681

Representative Sequences			Length	Strain/Species
genomic	545681	NCBI Gene Model | MGI Sequence Detail	20552	C57BL/6J
transcript	NR_102393	RefSeq | MGI Sequence Detail	4493	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Gm12992:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43616	Chr4:131648013-131648018 (-)	-676 bp