Gm12940 Gene Detail

Summary

• Symbol
  Gm12940
• Name
  predicted gene 12940

• Feature Type
  lncRNA gene
• IDs
  MGI:3702626
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:126927524-126943191 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 61.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  330 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702626	lncRNA gene	Chr4:126927524-126943191 (+)
129S1/SvImJ	ENSMUSG00200014965	lncRNA gene	Chr4:120360067-120375744 (+)
A/J	ENSMUSG00195033162	lncRNA gene	Chr4:121696516-121712191 (+)
AKR/J	ENSMUSG00220022405	lncRNA gene	Chr4:120682762-120698431 (+)
BALB/cJ	ENSMUSG00180046518	lncRNA gene	Chr4:119336321-119351982 (+)
C3H/HeJ	ENSMUSG00175026103	lncRNA gene	Chr4:120349013-120364674 (+)
C57BL/6NJ	ENSMUSG00215052317	lncRNA gene	Chr4:121846340-121862006 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013704	unclassified non-coding RNA gene	Chr4:116800409-116816885 (+)
CAST/EiJ	ENSTCUG00005045729	lncRNA gene	Chr4:121225237-121241083 (+)
CBA/J	ENSMUSG00210052881	lncRNA gene	Chr4:119977910-119993571 (+)
DBA/2J	ENSMUSG00185048410	lncRNA gene	Chr4:121510530-121526191 (+)
FVB/NJ	ENSMUSG00205031231	lncRNA gene	Chr4:119722508-119738173 (+)
JF1/MsJ	ENSUMUG00000025098	lncRNA gene	Chr4:122147156-122162820 (+)
LP/J	ENSMUSG00230039103	lncRNA gene	Chr4:125297679-125313356 (+)
NOD/ShiLtJ	ENSMUSG00190046094	lncRNA gene	Chr4:119722475-119738146 (+)
NZO/HlLtJ	ENSMUSG00225016150	lncRNA gene	Chr4:131204380-131220055 (+)
PWK/PhJ	ENSLUMG00010047129	lncRNA gene	Chr4:119181652-119197278 (+)
SPRET/EiJ	ENSMSPG00010042505	lncRNA gene	Chr4:121256429-121268726 (+)
WSB/EiJ	ENSIUOG00005048839	lncRNA gene	Chr4:119579512-119595178 (+)

Homology

• Gene Tree
  Gm12940
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12940
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000085334 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085334	Ensembl Gene Model | MGI Sequence Detail	15668	C57BL/6J
transcript	ENSMUST00000137236	Ensembl | MGI Sequence Detail	1970	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12940:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39039	Chr4:126928892-126928908 (+)	1,376 bp
Tssr39040	Chr4:126929461-126929471 (+)	1,942 bp