Gm12758 Gene Detail

Summary

• Symbol
  Gm12758
• Name
  predicted gene 12758

• Feature Type
  lncRNA gene
• IDs
  MGI:3702543
  NCBI Gene: 100126229
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:33933802-33939632 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  254 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702543	lncRNA gene	Chr7:33933736-33939632 (+)
129S1/SvImJ	ENSMUSG00200026816	lncRNA gene	Chr7:22682076-22687913 (+)
A/J	ENSMUSG00195050168	lncRNA gene	Chr7:25634472-25640309 (+)
AKR/J	ENSMUSG00220029234	lncRNA gene	Chr7:13470984-13476815 (+)
BALB/cJ	ENSMUSG00180021229	lncRNA gene	Chr7:23191445-23197280 (+)
C3H/HeJ	ENSMUSG00175039998	lncRNA gene	Chr7:23726377-23732207 (+)
C57BL/6NJ	ENSMUSG00215028327	lncRNA gene	Chr7:23083591-23089422 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004010	antisense lncRNA gene	Chr7:33407959-33413854 (+)
CAST/EiJ	ENSTCUG00005049425	lncRNA gene	Chr7:24843690-24849514 (+)
CBA/J	ENSMUSG00210027119	lncRNA gene	Chr7:23745760-23751590 (+)
DBA/2J	ENSMUSG00185053834	lncRNA gene	Chr7:26500074-26506119 (+)
FVB/NJ	ENSMUSG00205025445	lncRNA gene	Chr7:23461181-23467011 (+)
JF1/MsJ	ENSUMUG00000036138	lncRNA gene	Chr7:30979503-30985562 (+)
LP/J	ENSMUSG00230015305	lncRNA gene	Chr7:32173918-32179749 (+)
NOD/ShiLtJ	ENSMUSG00190008961	lncRNA gene	Chr7:23345228-23351063 (+)
NZO/HlLtJ	ENSMUSG00225010188	lncRNA gene	Chr7:30544189-30550248 (+)
PWK/PhJ	ENSLUMG00010023091	lncRNA gene	Chr7:22918903-22924940 (+)
SPRET/EiJ	ENSMSPG00010005725	lncRNA gene	Chr7:22928876-22934704 (+)
WSB/EiJ	ENSIUOG00005008826	lncRNA gene	Chr7:23513740-23519576 (+)

Homology

• Gene Tree
  Gm12758
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  15
• Gene trapped
  15
• Find Mice (IMSR)
  18 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000085105 (Evidence)
• NCBI Gene
  100126229

Representative Sequences			Length	Strain/Species
genomic	100126229	NCBI Gene Model | MGI Sequence Detail	5831	C57BL/6J
transcript	NR_166613	RefSeq | MGI Sequence Detail	4175	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9