Gm11989 Pseudogene Detail

Summary

• Symbol
  Gm11989
• Name
  predicted gene 11989

• Feature Type
  pseudogene
• IDs
  MGI:3702318
  NCBI Gene: 665380
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:8333182-8333853 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 4.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702318	pseudogene	Chr11:8333182-8333853 (-)
129S1/SvImJ	ENSMUSG00200034890	pseudogene	Chr11:5318429-5319100 (-)
A/J	ENSMUSG00195024537	pseudogene	Chr11:5185565-5186355 (-)
AKR/J	ENSMUSG00220009257	pseudogene	Chr11:5214773-5215563 (-)
BALB/cJ	ENSMUSG00180029171	pseudogene	Chr11:5202119-5202909 (-)
C3H/HeJ	ENSMUSG00175010662	pseudogene	Chr11:5205231-5205902 (-)
C57BL/6NJ	ENSMUSG00215034733	pseudogene	Chr11:5228243-5228914 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040344	pseudogene	Chr11:5285550-5286221 (-)
CBA/J	ENSMUSG00210018412	pseudogene	Chr11:5212818-5213489 (-)
DBA/2J	ENSMUSG00185018855	pseudogene	Chr11:5310594-5311265 (-)
FVB/NJ	ENSMUSG00205035514	pseudogene	Chr11:5219169-5219840 (-)
JF1/MsJ	ENSUMUG00000050741	pseudogene	Chr11:5481741-5482412 (-)
LP/J	ENSMUSG00230035744	pseudogene	Chr11:6354119-6354909 (-)
NOD/ShiLtJ	ENSMUSG00190043566	pseudogene	Chr11:5198293-5199083 (-)
NZO/HlLtJ	ENSMUSG00225026469	pseudogene	Chr11:8419742-8420413 (-)
PWK/PhJ	ENSLUMG00010019937	pseudogene	Chr11:5195650-5196321 (-)
SPRET/EiJ	ENSMSPG00010008977	pseudogene	Chr11:5265296-5266100 (-)
SPRET/EiJ	ENSMSPG00010029838	pseudogene	Chr9:52425559-52426363 (+)
WSB/EiJ	ENSIUOG00005008049	pseudogene	Chr11:5210157-5210828 (-)

Homology

• Gene Tree
  Gm11989
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000083553 (Evidence)
• NCBI Gene
  665380

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083553	Ensembl Gene Model | MGI Sequence Detail	672	C57BL/6J
transcript	ENSMUST00000117240	Ensembl | MGI Sequence Detail	672	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;