Gm11944 Gene Detail

Summary

• Symbol
  Gm11944
• Name
  predicted gene 11944

• Feature Type
  lncRNA gene
• IDs
  MGI:3702312
  NCBI Gene: 100302648
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:3259000-3270722 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  289 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702312	lncRNA gene	Chr11:3258996-3270722 (+)
129S1/SvImJ	ENSMUSG00200035122	lncRNA gene	Chr11:212029-223762 (+)
A/J	ENSMUSG00195024685	lncRNA gene	Chr11:119316-131039 (+)
AKR/J	ENSMUSG00220009287	lncRNA gene	Chr11:132442-144187 (+)
BALB/cJ	ENSMUSG00180029706	lncRNA gene	Chr11:142281-154026 (+)
C3H/HeJ	ENSMUSG00175010230	lncRNA gene	Chr11:132113-143843 (+)
C57BL/6NJ	ENSMUSG00215034281	lncRNA gene	Chr11:142426-154153 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013285	unclassified non-coding RNA gene	Chr11:138601-150163 (+)
CAST/EiJ	ENSTCUG00005039196	lncRNA gene	Chr11:226865-238636 (+)
CBA/J	ENSMUSG00210018463	lncRNA gene	Chr11:131859-143588 (+)
DBA/2J	ENSMUSG00185019309	lncRNA gene	Chr11:229468-241199 (+)
FVB/NJ	ENSMUSG00205035007	lncRNA gene	Chr11:102753-114486 (+)
JF1/MsJ	ENSUMUG00000046315	lncRNA gene	Chr11:374902-386696 (+)
LP/J	ENSMUSG00230035882	lncRNA gene	Chr11:1295269-1306996 (+)
NOD/ShiLtJ	ENSMUSG00190043274	lncRNA gene	Chr11:119231-130956 (+)
NZO/HlLtJ	ENSMUSG00225026256	lncRNA gene	Chr11:3352220-3363956 (+)
PWK/PhJ	ENSLUMG00010019208	lncRNA gene	Chr11:120009-131878 (+)
SPRET/EiJ	ENSMSPG00010008707	lncRNA gene	Chr11:202941-215447 (+)
WSB/EiJ	ENSIUOG00005007564	lncRNA gene	Chr11:133113-144839 (+)

Homology

• Gene Tree
  Gm11944
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000084941 (Evidence)
• NCBI Gene
  100302648

Representative Sequences			Length	Strain/Species
genomic	100302648	NCBI Gene Model | MGI Sequence Detail	11723	C57BL/6J
transcript	NR_045708	RefSeq | MGI Sequence Detail	869	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11944:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100037	Chr11:3260056-3260061 (+)	1,059 bp
Tssr100038	Chr11:3261032-3261059 (+)	2,046 bp