Gm11940 Gene Detail

Summary

• Symbol
  Gm11940
• Name
  predicted gene 11940

• Feature Type
  lncRNA gene
• IDs
  MGI:3702271
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:99278166-99278723 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 62.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702271	lncRNA gene	Chr11:99278166-99278723 (+)
129S1/SvImJ	ENSMUSG00200053723	lncRNA gene	Chr11:96539339-96539891 (+)
A/J	ENSMUSG00195052319	lncRNA gene	Chr11:96248199-96248756 (+)
AKR/J	ENSMUSG00220052904	lncRNA gene	Chr11:96506001-96506548 (+)
BALB/cJ	ENSMUSG00180052722	lncRNA gene	Chr11:96535739-96536296 (+)
C3H/HeJ	ENSMUSG00175052258	lncRNA gene	Chr11:96512871-96513423 (+)
C57BL/6NJ	ENSMUSG00215054305	lncRNA gene	Chr11:96096653-96097210 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002700	antisense lncRNA gene	Chr11:95317090-95317638 (+)
CAST/EiJ	ENSTCUG00005051225	lncRNA gene	Chr11:96032732-96033279 (+)
CBA/J	ENSMUSG00210053506	lncRNA gene	Chr11:96221450-96222006 (+)
DBA/2J	ENSMUSG00185053244	lncRNA gene	Chr11:96562809-96563361 (+)
FVB/NJ	ENSMUSG00205051249	lncRNA gene	Chr11:96428615-96429167 (+)
JF1/MsJ	ENSUMUG00000056559	lncRNA gene	Chr11:96854986-96855533 (+)
LP/J	ENSMUSG00230051229	lncRNA gene	Chr11:97615632-97616184 (+)
NOD/ShiLtJ	ENSMUSG00190052424	lncRNA gene	Chr11:96597708-96598260 (+)
NZO/HlLtJ	ENSMUSG00225052995	lncRNA gene	Chr11:99675488-99676045 (+)
PWK/PhJ	ENSLUMG00010052122	lncRNA gene	Chr11:96414403-96414952 (+)
SPRET/EiJ	ENSMSPG00010051171	lncRNA gene	Chr11:96947329-96947879 (+)
WSB/EiJ	ENSIUOG00005051677	lncRNA gene	Chr11:96374140-96374688 (+)

Homology

• Gene Tree
  Gm11940
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm11940
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000087692 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087692	Ensembl Gene Model | MGI Sequence Detail	558	C57BL/6J
transcript	ENSMUST00000153599	Ensembl | MGI Sequence Detail	417	Not Applicable

References

• Summaries
  All 13

  Phenotypes 7
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:357457 Kumar V, et al., Keratin-dependent thymic stromal lymphopoietin expression suggests a link between skin blistering and atopic disease. J Allergy Clin Immunol. 2016;138(5):1461-1464

TSS for Gm11940:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104868	Chr11:99276413-99276427 (+)	-1,746 bp
Tssr104869	Chr11:99278158-99278171 (+)	-1 bp