Gm11940 Gene Detail

Summary

• Symbol
  Gm11940
• Name
  predicted gene 11940

• Feature Type
  lncRNA gene
• IDs
  MGI:3702271
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:99278166-99278723 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 62.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702271	lncRNA gene	Chr11:99278166-99278723 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003056	antisense lncRNA gene	Chr11:102051543-102052095 (+)
A/J	MGP_AJ_G0003033	antisense lncRNA gene	Chr11:97755217-97755774 (+)
AKR/J	MGP_AKRJ_G0003014	antisense lncRNA gene	Chr11:100789982-100790529 (+)
BALB/cJ	MGP_BALBcJ_G0003020	antisense lncRNA gene	Chr11:98261103-98261660 (+)
C3H/HeJ	MGP_C3HHeJ_G0002976	antisense lncRNA gene	Chr11:100939780-100940332 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003162	antisense lncRNA gene	Chr11:105189906-105190463 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002700	antisense lncRNA gene	Chr11:95317090-95317638 (+)
CAST/EiJ	MGP_CASTEiJ_G0002946	antisense lncRNA gene	Chr11:101935044-101935595 (+)
CBA/J	MGP_CBAJ_G0002973	antisense lncRNA gene	Chr11:109570939-109571496 (+)
DBA/2J	MGP_DBA2J_G0002979	antisense lncRNA gene	Chr11:97321716-97322268 (+)
FVB/NJ	MGP_FVBNJ_G0002998	antisense lncRNA gene	Chr11:96831907-96832459 (+)
LP/J	MGP_LPJ_G0003055	antisense lncRNA gene	Chr11:102518667-102519219 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002986	antisense lncRNA gene	Chr11:109236447-109236999 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003166	antisense lncRNA gene	Chr11:101147391-101147948 (+)
PWK/PhJ	MGP_PWKPhJ_G0002904	antisense lncRNA gene	Chr11:98394527-98395076 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002849	antisense lncRNA gene	Chr11:100904276-100904827 (+)
WSB/EiJ	MGP_WSBEiJ_G0002976	antisense lncRNA gene	Chr11:101123711-101124259 (+)

Homology

• Gene Tree
  Gm11940
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm11940
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087692 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087692	Ensembl Gene Model | MGI Sequence Detail	558	C57BL/6J
transcript	ENSMUST00000153599	Ensembl | MGI Sequence Detail	417	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:230728 Kumar V, et al., A keratin scaffold regulates epidermal barrier formation, mitochondrial lipid composition, and activity. J Cell Biol. 2015 Dec 7;211(5):1057-75

TSS for Gm11940:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104868	Chr11:99276413-99276427 (+)	-1,746 bp
Tssr104869	Chr11:99278158-99278171 (+)	-1 bp