Trav20 Pseudogene Detail

Summary

• Symbol
  Trav20
• Name
  T cell receptor alpha variable 20
• Synonyms
  Gm14030

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:3702156
  NCBI Gene: 100101939
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54100567-54101118 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702156	pseudogenic gene segment	Chr14:54100567-54101118 (+)
129S1/SvImJ	ENSMUSG00200044593	pseudogenic gene segment	Chr14:42689477-42690028 (+)
A/J	ENSMUSG00195034046	pseudogenic gene segment	Chr14:42913292-42913843 (+)
AKR/J	ENSMUSG00220037451	pseudogenic gene segment	Chr14:42240534-42241085 (+)
BALB/cJ	ENSMUSG00180052623	pseudogenic gene segment	Chr14:42537064-42537615 (+)
C3H/HeJ	ENSMUSG00175050573	pseudogenic gene segment	Chr14:44219522-44220073 (+)
C57BL/6NJ	ENSMUSG00215050462	pseudogenic gene segment	Chr14:42423364-42423915 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002274	pseudogenic gene segment	Chr14:45322014-45322499 (+)
CAST/EiJ	ENSTCUG00005049985	pseudogenic gene segment	Chr14:44230705-44231250 (+)
CBA/J	ENSMUSG00210049441	pseudogenic gene segment	Chr14:42896954-42897505 (+)
DBA/2J	ENSMUSG00185055348	pseudogenic gene segment	Chr14:47941290-47941841 (+)
FVB/NJ	ENSMUSG00205041744	pseudogenic gene segment	Chr14:42302985-42303536 (+)
JF1/MsJ	ENSUMUG00000054439	pseudogenic gene segment	Chr14:59210951-59211499 (+)
LP/J	ENSMUSG00230053509	pseudogenic gene segment	Chr14:60055504-60056055 (+)
NOD/ShiLtJ	ENSMUSG00190049180	pseudogenic gene segment	Chr14:42644239-42644790 (+)
NZO/HlLtJ	ENSMUSG00225052420	pseudogenic gene segment	Chr14:50353578-50354129 (+)
PWK/PhJ	ENSLUMG00010051902	pseudogenic gene segment	Chr14:42123599-42124150 (+)
SPRET/EiJ	ENSMSPG00010048084	pseudogenic gene segment	Chr14:45524618-45525168 (+)
WSB/EiJ	ENSIUOG00005047799	pseudogenic gene segment	Chr14:42121798-42122349 (+)

Homology

• Gene Tree
  Trav20
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav20
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086858 (Evidence)
• NCBI Gene
  100101939

Representative Sequences			Length	Strain/Species
genomic	100101939	NCBI Gene Model | MGI Sequence Detail	552	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trav20:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125505	Chr14:54100514-54100545 (+)	-37 bp