Gm13748 Gene Detail

Summary

• Symbol
  Gm13748
• Name
  predicted gene 13748

• Feature Type
  lncRNA gene
• IDs
  MGI:3702115
  NCBI Gene: 102639767
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:64117813-64129941 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 32.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  301 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702115	lncRNA gene	Chr1:64117813-64140362 (+)
129S1/SvImJ	ENSMUSG00200004924	lncRNA gene	Chr1:61628069-61640180 (+)
A/J	ENSMUSG00195031612	lncRNA gene	Chr1:61150407-61162516 (+)
AKR/J	ENSMUSG00220039956	lncRNA gene	Chr1:61260180-61272255 (+)
BALB/cJ	ENSMUSG00180031419	lncRNA gene	Chr1:61445993-61458123 (+)
C3H/HeJ	ENSMUSG00175000862	lncRNA gene	Chr1:61544218-61556327 (+)
C57BL/6NJ	ENSMUSG00215023405	lncRNA gene	Chr1:61471724-61483852 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002348	antisense lncRNA gene	Chr1:58059104-58071224 (+)
CAST/EiJ	ENSTCUG00005021807	lncRNA gene	Chr1:61290088-61302299 (+)
CBA/J	ENSMUSG00210003218	lncRNA gene	Chr1:61229380-61241493 (+)
DBA/2J	ENSMUSG00185005094	lncRNA gene	Chr1:62346309-62358422 (+)
FVB/NJ	ENSMUSG00205015662	lncRNA gene	Chr1:61176172-61188281 (+)
JF1/MsJ	ENSUMUG00000004769	lncRNA gene	Chr1:61277726-61289874 (+)
LP/J	ENSMUSG00230002894	lncRNA gene	Chr1:62337268-62349377 (+)
NOD/ShiLtJ	ENSMUSG00190014111	lncRNA gene	Chr1:61407238-61419347 (+)
NZO/HlLtJ	ENSMUSG00225001428	lncRNA gene	Chr1:65561959-65574068 (+)
PWK/PhJ	ENSLUMG00010007570	lncRNA gene	Chr1:60824202-60836331 (+)
SPRET/EiJ	ENSMSPG00010020103	lncRNA gene	Chr1:62801437-62813561 (+)
WSB/EiJ	ENSIUOG00005029921	lncRNA gene	Chr1:61023105-61035205 (+)

Homology

• Gene Tree
  Gm13748
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13748
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000086836 (Evidence)
• NCBI Gene
  102639767

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086836	Ensembl Gene Model | MGI Sequence Detail	12129	C57BL/6J
transcript	ENSMUST00000149820	Ensembl | MGI Sequence Detail	378	Not Applicable

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm13748:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7078	Chr1:64127349-64127356 (+)	9,540 bp