Bloc1s2-ps Pseudogene Detail

Summary

• Symbol
  Bloc1s2-ps
• Name
  biogenesis of lysosomal organelles complex-1, subunit 2, pseudogene
• Synonyms
  Bloc1s2b

• Feature Type
  pseudogene
• IDs
  MGI:3702045
  NCBI Gene: 625631
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:52509766-52510197 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 30.25 cM

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702045	pseudogene	Chr2:52509751-52510634 (+)
129S1/SvImJ	ENSMUSG00200011703	pseudogene	Chr2:49493054-49493485 (+)
A/J	ENSMUSG00195010279	pseudogene	Chr2:49642126-49642557 (+)
AKR/J	ENSMUSG00220020987	pseudogene	Chr2:49774397-49774828 (+)
BALB/cJ	ENSMUSG00180022378	pseudogene	Chr2:49630524-49630955 (+)
C3H/HeJ	ENSMUSG00175014379	pseudogene	Chr2:49666448-49666879 (+)
C57BL/6NJ	ENSMUSG00215015121	pseudogene	Chr2:49676363-49676794 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001598	pseudogene	Chr2:49182864-49183295 (+)
CBA/J	ENSMUSG00210001140	pseudogene	Chr2:49679382-49679813 (+)
DBA/2J	ENSMUSG00185002872	pseudogene	Chr2:49547060-49547491 (+)
FVB/NJ	ENSMUSG00205001833	pseudogene	Chr2:49344082-49344513 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230000813	pseudogene	Chr2:51455078-51455509 (+)
NOD/ShiLtJ	ENSMUSG00190002327	pseudogene	Chr2:49594603-49595034 (+)
NZO/HlLtJ	ENSMUSG00225000905	pseudogene	Chr2:59166239-59166670 (+)
PWK/PhJ	ENSLUMG00010004699	pseudogene	Chr2:49531216-49531648 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001356	pseudogene	Chr2:49630599-49631030 (+)

Homology

• Gene Tree
  Bloc1s2-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Bloc1s2-ps
• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000025201 (Evidence)
• NCBI Gene
  625631

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000025201	Ensembl Gene Model | MGI Sequence Detail	432	C57BL/6J
transcript	ENSMUST00000183232	Ensembl | MGI Sequence Detail	432	Not Applicable

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Bloc1s2-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17728	Chr2:52509747-52509758 (+)	-13 bp