Gm13284 Pseudogene Detail

Summary

• Symbol
  Gm13284
• Name
  predicted gene 13284

• Feature Type
  pseudogene
• IDs
  MGI:3701980
  NCBI Gene: 668147
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:88681946-88689843 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 42.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3701980	pseudogene	Chr4:88681291-88690101 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195009233	pseudogene	Chr4:84239317-84247214 (+)
AKR/J	ENSMUSG00220020271	pseudogene	Chr4:83628771-83629319 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215021532	pseudogene	Chr4:84056511-84064408 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185003109	pseudogene	Chr4:84350938-84351486 (+)
FVB/NJ	ENSMUSG00205014772	pseudogene	Chr4:82571237-82579134 (+)
JF1/MsJ	ENSUMUG00000003636	pseudogene	Chr4:84562943-84566437 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190017302	pseudogene	Chr4:83131271-83131819 (+)
NZO/HlLtJ	ENSMUSG00225003313	pseudogene	Chr4:92868781-92876678 (+)
PWK/PhJ	ENSLUMG00010003720	pseudogene	Chr4:82438559-82447979 (+)
SPRET/EiJ	ENSMSPG00010015150	pseudogene	Chr4:84164995-84165543 (+)
WSB/EiJ	ENSIUOG00005013166	pseudogene	Chr4:83524115-83532008 (+)

Homology

• Gene Tree
  Gm13284
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  2
• Radiation induced
  1
• Genomic Mutations
  5 involving Gm13284
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000082789 (Evidence)
• NCBI Gene
  668147

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082789	Ensembl Gene Model | MGI Sequence Detail	7898	C57BL/6J
transcript	ENSMUST00000121020	Ensembl | MGI Sequence Detail	547	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48