Gm13112 Gene Detail

Summary

• Symbol
  Gm13112
• Name
  predicted gene 13112

• Feature Type
  lncRNA gene
• IDs
  MGI:3701127
  NCBI Gene: 102634887
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:154948943-154957002 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 85.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  426 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3701127	lncRNA gene	Chr4:154947291-154957002 (-)
129S1/SvImJ	ENSMUSG00200019695	lncRNA gene	Chr4:146003981-146011875 (-)
A/J	ENSMUSG00195020113	lncRNA gene	Chr4:147664712-147672285 (-)
AKR/J	ENSMUSG00220027323	lncRNA gene	Chr4:147245441-147253335 (-)
BALB/cJ	ENSMUSG00180002671	lncRNA gene	Chr4:145318352-145326206 (-)
C3H/HeJ	ENSMUSG00175019673	lncRNA gene	Chr4:148625444-148633298 (-)
C57BL/6NJ	ENSMUSG00215027704	lncRNA gene	Chr4:147468790-147476287 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003615	antisense lncRNA gene	Chr4:144768664-144776440 (-)
CAST/EiJ	ENSTCUG00005034691	lncRNA gene	Chr4:151331233-151339038 (-)
CBA/J	ENSMUSG00210006376	lncRNA gene	Chr4:147283741-147291595 (-)
DBA/2J	ENSMUSG00185016885	lncRNA gene	Chr4:150841195-150849089 (-)
FVB/NJ	ENSMUSG00205021823	lncRNA gene	Chr4:145737509-145745363 (-)
JF1/MsJ	ENSUMUG00000000430	lncRNA gene	Chr4:153872386-153879883 (-)
LP/J	ENSMUSG00230026234	lncRNA gene	Chr4:157566347-157574201 (-)
NOD/ShiLtJ	ENSMUSG00190004367	lncRNA gene	Chr4:146941143-146948997 (-)
NZO/HlLtJ	ENSMUSG00225024659	lncRNA gene	Chr4:161562464-161570318 (-)
PWK/PhJ	ENSLUMG00010028443	lncRNA gene	Chr4:146128487-146136314 (-)
SPRET/EiJ	ENSMSPG00010025550	lncRNA gene	Chr4:148071468-148079301 (-)
WSB/EiJ	ENSIUOG00005006874	lncRNA gene	Chr4:145151390-145159268 (-)

Homology

• Gene Tree
  Gm13112
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  2
• Targeted
  3
• Genomic Mutations
  3 involving Gm13112
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000087437 (Evidence)
• NCBI Gene
  102634887

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087437	Ensembl Gene Model | MGI Sequence Detail	8060	C57BL/6J
transcript	ENSMUST00000253080	Ensembl | MGI Sequence Detail	1483	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16

TSS for Gm13112:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44887	Chr4:154956482-154956503 (-)	509 bp