D630008O14Rik Gene Detail

Summary

• Symbol
  D630008O14Rik
• Name
  RIKEN cDNA D630008O14 gene
• Synonyms
  D630044D05Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:3698880
  NCBI Gene: 320761
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:106469673-106502778 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 49.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1005 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3698880	lncRNA gene	Chr1:106469673-106502778 (+)
129S1/SvImJ	ENSMUSG00200000521	lncRNA gene	Chr1:103772836-103805915 (+)
A/J	ENSMUSG00195007926	lncRNA gene	Chr1:103253669-103286772 (+)
AKR/J	ENSMUSG00220000291	lncRNA gene	Chr1:103345659-103378758 (+)
BALB/cJ	ENSMUSG00180000533	lncRNA gene	Chr1:103539511-103572612 (+)
C3H/HeJ	ENSMUSG00175000621	lncRNA gene	Chr1:103468765-103501860 (+)
C57BL/6NJ	ENSMUSG00215007280	lncRNA gene	Chr1:103464688-103497792 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002383	antisense lncRNA gene	Chr1:99216371-99248333 (+)
CAST/EiJ	ENSTCUG00005002872	lncRNA gene	Chr1:102803074-102836135 (+)
CBA/J	ENSMUSG00210000280	lncRNA gene	Chr1:103348911-103382010 (+)
DBA/2J	ENSMUSG00185008742	lncRNA gene	Chr1:107796077-107829156 (+)
FVB/NJ	ENSMUSG00205008610	lncRNA gene	Chr1:102653129-102686227 (+)
JF1/MsJ	ENSUMUG00000000243	lncRNA gene	Chr1:106379471-106412512 (+)
LP/J	ENSMUSG00230000190	lncRNA gene	Chr1:107058858-107091939 (+)
NOD/ShiLtJ	ENSMUSG00190000722	lncRNA gene	Chr1:103408106-103441211 (+)
NZO/HlLtJ	ENSMUSG00225000329	lncRNA gene	Chr1:110945038-110978135 (+)
PWK/PhJ	ENSLUMG00010000181	lncRNA gene	Chr1:102791209-102824237 (+)
SPRET/EiJ	ENSMSPG00010000634	lncRNA gene	Chr1:105061677-105094813 (+)
WSB/EiJ	ENSIUOG00005001008	lncRNA gene	Chr1:103154377-103187492 (+)

Homology

• Gene Tree
  D630008O14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving D630008O14Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  606
• Tissues
  8
• cDNA Data
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• UniProt
  1

• Ensembl
  ENSMUSG00000054006 (Evidence)
• NCBI Gene
  320761

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054006	Ensembl Gene Model | MGI Sequence Detail	33106	C57BL/6J
transcript	ENSMUST00000144260	Ensembl | MGI Sequence Detail	1568	Not Applicable
polypeptide	Q8C703	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 3

  Primer pair 1

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for D630008O14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8317	Chr1:106469668-106469706 (+)	14 bp