C530020B09Rik Gene Detail

Summary

• Symbol
  C530020B09Rik
• Name
  RIKEN cDNA C530020B09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3698878
  NCBI Gene: 100313510
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:113423425-113424371 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3698878	lncRNA gene	Chr3:113423425-113424371 (+)
129S1/SvImJ	ENSMUSG00200035736	lncRNA gene	Chr3:110041704-110042543 (+)
A/J	ENSMUSG00195026588	lncRNA gene	Chr3:110353704-110354543 (+)
AKR/J	ENSMUSG00220033750	lncRNA gene	Chr3:108747491-108748330 (+)
BALB/cJ	ENSMUSG00180019102	lncRNA gene	Chr3:110298449-110299288 (+)
C3H/HeJ	ENSMUSG00175031150	lncRNA gene	Chr3:109838680-109839519 (+)
C57BL/6NJ	ENSMUSG00215035916	lncRNA gene	Chr3:110547044-110547883 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027223	lncRNA gene	Chr3:110848392-110849231 (+)
CBA/J	ENSMUSG00210008788	lncRNA gene	Chr3:110448049-110448888 (+)
DBA/2J	ENSMUSG00185023317	lncRNA gene	Chr3:111037951-111038790 (+)
FVB/NJ	ENSMUSG00205032037	lncRNA gene	Chr3:109500705-109501544 (+)
JF1/MsJ	ENSUMUG00000006128	lncRNA gene	Chr3:109870504-109871343 (+)
LP/J	ENSMUSG00230012063	lncRNA gene	Chr3:112937228-112938067 (+)
NOD/ShiLtJ	ENSMUSG00190040801	lncRNA gene	Chr3:111328409-111329248 (+)
NZO/HlLtJ	ENSMUSG00225003740	lncRNA gene	Chr3:115460440-115461279 (+)
PWK/PhJ	ENSLUMG00010024984	lncRNA gene	Chr3:109762840-109763679 (+)
SPRET/EiJ	ENSMSPG00010036726	lncRNA gene	Chr3:110390437-110391279 (+)
WSB/EiJ	ENSIUOG00005005222	lncRNA gene	Chr3:110477604-110478443 (+)

Homology

• Gene Tree
  C530020B09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving C530020B09Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000121018 (Evidence)
• NCBI Gene
  100313510

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121018	Ensembl Gene Model | MGI Sequence Detail	947	C57BL/6J
transcript	ENSMUST00000246879	Ensembl | MGI Sequence Detail	947	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for C530020B09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31309	Chr3:113423482-113423518 (+)	75 bp
Tssr31310	Chr3:113423874-113423889 (+)	457 bp