0610009E02Rik Gene Detail

Summary

• Symbol
  0610009E02Rik
• Name
  RIKEN cDNA 0610009E02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3698435
  NCBI Gene: 100125929
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:26335936-26349402 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 18.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  318 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3698435	lncRNA gene	Chr2:26335577-26361503 (+)
129S1/SvImJ	ENSMUSG00200053372	lncRNA gene	Chr2:23314927-23328627 (+)
A/J	ENSMUSG00195049732	lncRNA gene	Chr2:23403755-23417439 (+)
AKR/J	ENSMUSG00220053950	lncRNA gene	Chr2:23521528-23535212 (+)
BALB/cJ	ENSMUSG00180054325	lncRNA gene	Chr2:23416389-23430094 (+)
C3H/HeJ	ENSMUSG00175053900	lncRNA gene	Chr2:23385799-23399502 (+)
C57BL/6NJ	ENSMUSG00215049633	lncRNA gene	Chr2:23444527-23458229 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013536	unclassified non-coding RNA gene	Chr2:22344673-22358307 (+)
CAST/EiJ	ENSTCUG00005053339	lncRNA gene	Chr2:23153237-23166947 (+)
CBA/J	ENSMUSG00210017887	lncRNA gene	Chr2:23419453-23433153 (+)
DBA/2J	ENSMUSG00185053290	lncRNA gene	Chr2:23317875-23331557 (+)
FVB/NJ	ENSMUSG00205050573	lncRNA gene	Chr2:23173312-23187013 (+)
JF1/MsJ	ENSUMUG00000056333	lncRNA gene	Chr2:23224732-23238463 (+)
LP/J	ENSMUSG00230045966	lncRNA gene	Chr2:25250884-25264584 (+)
NOD/ShiLtJ	ENSMUSG00190053287	lncRNA gene	Chr2:23409828-23423529 (+)
NZO/HlLtJ	ENSMUSG00225011284	lncRNA gene	Chr2:32988503-33002202 (+)
PWK/PhJ	ENSLUMG00010053084	lncRNA gene	Chr2:23316646-23329879 (+)
SPRET/EiJ	ENSMSPG00010047293	lncRNA gene	Chr2:24010985-24024377 (+)
WSB/EiJ	ENSIUOG00005052730	lncRNA gene	Chr2:23274906-23288616 (+)

Homology

• Gene Tree
  0610009E02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  9
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  3

• Ensembl
  ENSMUSG00000086714 (Evidence)
• NCBI Gene
  100125929

Representative Sequences			Length	Strain/Species
genomic	100125929	NCBI Gene Model | MGI Sequence Detail	13467	C57BL/6J
transcript	NR_152207	RefSeq | MGI Sequence Detail	1398	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 0610009E02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16794	Chr2:26335906-26335963 (+)	-1 bp
Tssr16795	Chr2:26336033-26336045 (+)	103 bp
Tssr16796	Chr2:26344976-26344977 (+)	9,041 bp