9630029G12Rik Gene Detail

Summary

• Symbol
  9630029G12Rik
• Name
  RIKEN cDNA 9630029G12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3698177
  NCBI Gene: 100126202
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:18891319-18896467 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  256 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3698177	lncRNA gene	Chr8:18891319-18896467 (-)
129S1/SvImJ	ENSMUSG00200033547	lncRNA gene	Chr8:15711605-15712563 (-)
A/J	ENSMUSG00195042707	lncRNA gene	Chr8:16134664-16135622 (-)
AKR/J	ENSMUSG00220034348	lncRNA gene	Chr8:15888353-15889311 (-)
BALB/cJ	ENSMUSG00180025909	lncRNA gene	Chr8:15755021-15755979 (-)
C3H/HeJ	ENSMUSG00175040546	lncRNA gene	Chr8:15933073-15934031 (-)
C57BL/6NJ	ENSMUSG00215030428	lncRNA gene	Chr8:15865356-15866314 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019904	lncRNA gene	Chr8:15700886-15701874 (-)
CBA/J	ENSMUSG00210042335	lncRNA gene	Chr8:15771943-15772901 (-)
DBA/2J	ENSMUSG00185006813	lncRNA gene	Chr8:15899719-15900677 (-)
FVB/NJ	ENSMUSG00205032364	lncRNA gene	Chr8:15786314-15787272 (-)
JF1/MsJ	ENSUMUG00000031374	lncRNA gene	Chr8:15786958-15787920 (-)
LP/J	ENSMUSG00230024080	lncRNA gene	Chr8:17985327-17986287 (-)
NOD/ShiLtJ	ENSMUSG00190037685	lncRNA gene	Chr8:15904176-15905134 (-)
NZO/HlLtJ	ENSMUSG00225042408	lncRNA gene	Chr8:25828993-25829951 (-)
PWK/PhJ	ENSLUMG00010031159	lncRNA gene	Chr8:15766412-15767390 (-)
SPRET/EiJ	ENSMSPG00010015124	lncRNA gene	Chr8:15995910-15996861 (-)
WSB/EiJ	ENSIUOG00005022189	lncRNA gene	Chr8:15846265-15847223 (-)

Homology

• Gene Tree
  9630029G12Rik
  

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120062 (Evidence)
• NCBI Gene
  100126202

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120062	Ensembl Gene Model | MGI Sequence Detail	5149	C57BL/6J
transcript	ENSMUST00000241181	Ensembl | MGI Sequence Detail	2361	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:7337579

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for 9630029G12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80534	Chr8:18896163-18896206 (-)	282 bp