Phtf1os Gene Detail

Summary

• Symbol
  Phtf1os
• Name
  putative homeodomain transcription factor 1, opposite strand
• Synonyms
  A130049A11Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3698050
  NCBI Gene: 100125931
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:103871852-103875632 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 45.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3698050	antisense lncRNA gene	Chr3:103871852-103875960 (-)
129S1/SvImJ	ENSMUSG00200046248	lncRNA gene	Chr3:100480877-100484922 (-)
A/J	ENSMUSG00195049355	lncRNA gene	Chr3:100894477-100898522 (-)
AKR/J	ENSMUSG00220044489	lncRNA gene	Chr3:99254488-99258533 (-)
BALB/cJ	ENSMUSG00180044659	lncRNA gene	Chr3:100822019-100826057 (-)
C3H/HeJ	ENSMUSG00175032815	lncRNA gene	Chr3:100376793-100380838 (-)
C57BL/6NJ	ENSMUSG00215036059	lncRNA gene	Chr3:101141758-101145803 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003419	antisense lncRNA gene	Chr3:98038083-98042144 (-)
CAST/EiJ	ENSTCUG00005021790	lncRNA gene	Chr3:101100888-101104933 (-)
CBA/J	ENSMUSG00210051882	lncRNA gene	Chr3:100998825-101002870 (-)
DBA/2J	ENSMUSG00185023394	lncRNA gene	Chr3:101477936-101481981 (-)
FVB/NJ	ENSMUSG00205032269	lncRNA gene	Chr3:100059532-100063577 (-)
JF1/MsJ	ENSUMUG00000052460	lncRNA gene	Chr3:100230800-100234841 (-)
LP/J	ENSMUSG00230020520	lncRNA gene	Chr3:103409204-103413249 (-)
NOD/ShiLtJ	ENSMUSG00190050477	lncRNA gene	Chr3:101674015-101678053 (-)
NZO/HlLtJ	ENSMUSG00225020037	lncRNA gene	Chr3:105875776-105879814 (-)
PWK/PhJ	ENSLUMG00010032458	lncRNA gene	Chr3:100291481-100295522 (-)
SPRET/EiJ	ENSMSPG00010047738	lncRNA gene	Chr3:100508169-100512225 (-)
WSB/EiJ	ENSIUOG00005034488	lncRNA gene	Chr3:101019571-101023616 (-)

Homology

• Gene Tree
  Phtf1os
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving Phtf1os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000089998 (Evidence)
• NCBI Gene
  100125931

Representative Sequences			Length	Strain/Species
genomic	100125931	NCBI Gene Model | MGI Sequence Detail	3781	C57BL/6J
transcript	NR_030676	RefSeq | MGI Sequence Detail	3781	C57BL/6
polypeptide	Q8BQ56	UniProt | EBI | MGI Sequence Detail	118	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 2

References

• Summaries
  All 18

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Phtf1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34872	Chr3:103875594-103875637 (-)	16 bp