BC037039 MGI Mouse Gene Detail - MGI:3697820

Sequence Map

Chr18:37938771-37940975 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697820	lncRNA gene	Chr18:37938771-37940975 (-)
129S1/SvImJ	ENSMUSG00200045604	lncRNA gene	Chr18:34938107-34940311 (-)
A/J	ENSMUSG00195038173	lncRNA gene	Chr18:35088795-35090999 (-)
AKR/J	ENSMUSG00220017253	lncRNA gene	Chr18:35058739-35060943 (-)
BALB/cJ	ENSMUSG00180020773	lncRNA gene	Chr18:35538433-35540637 (-)
C3H/HeJ	ENSMUSG00175040124	lncRNA gene	Chr18:35053509-35055713 (-)
C57BL/6NJ	ENSMUSG00215029359	lncRNA gene	Chr18:34808331-34810535 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003065	antisense lncRNA gene	Chr18:34992408-34994617 (-)
CAST/EiJ	ENSTCUG00005024552	lncRNA gene	Chr18:34669028-34671232 (-)
CBA/J	ENSMUSG00210021922	lncRNA gene	Chr18:35080451-35082655 (-)
DBA/2J	ENSMUSG00185020540	lncRNA gene	Chr18:35015067-35017271 (-)
FVB/NJ	ENSMUSG00205038805	lncRNA gene	Chr18:34717036-34719240 (-)
JF1/MsJ	ENSUMUG00000049979	lncRNA gene	Chr18:35149467-35151671 (-)
LP/J	ENSMUSG00230048880	lncRNA gene	Chr18:37132256-37134460 (-)
NOD/ShiLtJ	ENSMUSG00190023015	lncRNA gene	Chr18:34801832-34804036 (-)
NZO/HlLtJ	ENSMUSG00225047559	lncRNA gene	Chr18:37039066-37041270 (-)
PWK/PhJ	ENSLUMG00010012839	lncRNA gene	Chr18:35292982-35295186 (-)
SPRET/EiJ	ENSMSPG00010022718	lncRNA gene	Chr18:35328262-35330467 (-)
WSB/EiJ	ENSIUOG00005008445	lncRNA gene	Chr18:34794889-34797093 (-)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000103309	Ensembl Gene Model \| MGI Sequence Detail	2205	C57BL/6J	± kb
	transcript	ENSMUST00000192003	Ensembl \| MGI Sequence Detail	2205	Not Applicable

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Summaries

All 12

Phenotypes 2
Earliest

J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
Latest

J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)

TSS for BC037039:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5288	Chr18:37940992-37941013 (-)	-28 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24