5730424H11Rik Gene Detail

Summary

• Symbol
  5730424H11Rik
• Name
  RIKEN cDNA 5730424H11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3697819
  NCBI Gene: 100038701
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:89080332-89082636 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697819	lncRNA gene	Chr15:89080332-89082636 (+)
129S1/SvImJ	ENSMUSG00200035789	lncRNA gene	Chr15:86232172-86234476 (+)
A/J	ENSMUSG00195020410	lncRNA gene	Chr15:86153884-86156188 (+)
AKR/J	ENSMUSG00220030506	lncRNA gene	Chr15:86184471-86186775 (+)
BALB/cJ	ENSMUSG00180015868	lncRNA gene	Chr15:86007712-86010016 (+)
C3H/HeJ	ENSMUSG00175029606	lncRNA gene	Chr15:86340526-86342830 (+)
C57BL/6NJ	ENSMUSG00215029103	lncRNA gene	Chr15:86101250-86103554 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031321	lncRNA gene	Chr15:85608387-85610691 (+)
CBA/J	ENSMUSG00210013286	lncRNA gene	Chr15:86109977-86112281 (+)
DBA/2J	ENSMUSG00185022471	lncRNA gene	Chr15:86121890-86124194 (+)
FVB/NJ	ENSMUSG00205036376	lncRNA gene	Chr15:85882850-85885154 (+)
JF1/MsJ	ENSUMUG00000044150	lncRNA gene	Chr15:85689824-85692274 (+)
LP/J	ENSMUSG00230045181	lncRNA gene	Chr15:89472356-89474660 (+)
NOD/ShiLtJ	ENSMUSG00190031450	lncRNA gene	Chr15:86126645-86128949 (+)
NZO/HlLtJ	ENSMUSG00225050897	lncRNA gene	Chr15:89789003-89791307 (+)
PWK/PhJ	ENSLUMG00010034654	lncRNA gene	Chr15:85842711-85845175 (+)
SPRET/EiJ	ENSMSPG00010014347	lncRNA gene	Chr15:87538774-87541239 (+)
WSB/EiJ	ENSIUOG00005011676	lncRNA gene	Chr15:86216834-86219139 (+)

Homology

• Gene Tree
  5730424H11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving 5730424H11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000121082 (Evidence)
• NCBI Gene
  100038701

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121082	Ensembl Gene Model | MGI Sequence Detail	2305	C57BL/6J
transcript	ENSMUST00000247088	Ensembl | MGI Sequence Detail	2305	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 21

  Phenotypes 16
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)

TSS for 5730424H11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132645	Chr15:89080340-89080367 (+)	22 bp
Tssr132646	Chr15:89080383-89080390 (+)	55 bp