B930046K06Rik Gene Detail

Summary

• Symbol
  B930046K06Rik
• Name
  RIKEN cDNA B930046K06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3697818
  NCBI Gene: 100038346
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:155683786-155686313 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697818	lncRNA gene	Chr4:155683786-155686313 (-)
129S1/SvImJ	ENSMUSG00200019946	lncRNA gene	Chr4:146738867-146741393 (-)
A/J	ENSMUSG00195020184	lncRNA gene	Chr4:148404944-148407470 (-)
AKR/J	ENSMUSG00220027642	lncRNA gene	Chr4:147980354-147982882 (-)
BALB/cJ	ENSMUSG00180002610	lncRNA gene	Chr4:146059548-146062074 (-)
C3H/HeJ	ENSMUSG00175020060	lncRNA gene	Chr4:149360170-149362696 (-)
C57BL/6NJ	ENSMUSG00215027085	lncRNA gene	Chr4:148206513-148209040 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035527	lncRNA gene	Chr4:152072335-152075041 (-)
CBA/J	ENSMUSG00210005966	lncRNA gene	Chr4:148018524-148021049 (-)
DBA/2J	ENSMUSG00185016865	lncRNA gene	Chr4:151576064-151578590 (-)
FVB/NJ	ENSMUSG00205021669	lncRNA gene	Chr4:146471557-146474061 (-)
JF1/MsJ	ENSUMUG00000000438	lncRNA gene	Chr4:154611553-154614054 (-)
LP/J	ENSMUSG00230026088	lncRNA gene	Chr4:158301390-158303917 (-)
NOD/ShiLtJ	ENSMUSG00190004324	lncRNA gene	Chr4:147675358-147677874 (-)
NZO/HlLtJ	ENSMUSG00225024610	lncRNA gene	Chr4:162298701-162301227 (-)
PWK/PhJ	ENSLUMG00010028524	lncRNA gene	Chr4:146865031-146867546 (-)
SPRET/EiJ	ENSMSPG00010025912	lncRNA gene	Chr4:148810569-148813079 (-)
WSB/EiJ	ENSIUOG00005006935	lncRNA gene	Chr4:145892952-145895474 (-)

Homology

• Gene Tree
  B930046K06Rik
  

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120844 (Evidence)
• NCBI Gene
  100038346

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120844	Ensembl Gene Model | MGI Sequence Detail	2528	C57BL/6J
transcript	ENSMUST00000246082	Ensembl | MGI Sequence Detail	2528	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for B930046K06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44955	Chr4:155686248-155686298 (-)	40 bp
Tssr44954	Chr4:155685713-155685749 (-)	582 bp