C230038L03Rik Gene Detail

Summary

• Symbol
  C230038L03Rik
• Name
  RIKEN cDNA C230038L03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3697433
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:96523806-96601093 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 53.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2285 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697433	lncRNA gene	Chr7:96523806-96601093 (-)
129S1/SvImJ	ENSMUSG00200050528	lncRNA gene	Chr7:83390523-83432621 (-)
A/J	ENSMUSG00195040010	lncRNA gene	Chr7:87895462-87937558 (-)
AKR/J	ENSMUSG00220044418	lncRNA gene	Chr7:81323578-81365673 (-)
BALB/cJ	ENSMUSG00180037754	lncRNA gene	Chr7:84568893-84610994 (-)
C3H/HeJ	ENSMUSG00175025302	lncRNA gene	Chr7:85234328-85277683 (-)
C57BL/6NJ	ENSMUSG00215034311	lncRNA gene	Chr7:84396910-84441974 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013804	unclassified non-coding RNA gene	Chr7:99611496-99654939 (-)
CAST/EiJ	ENSTCUG00005034930	lncRNA gene	Chr7:87791202-87841118 (-)
CBA/J	ENSMUSG00210025892	lncRNA gene	Chr7:85082406-85125762 (-)
DBA/2J	ENSMUSG00185034529	lncRNA gene	Chr7:89409073-89452424 (-)
FVB/NJ	ENSMUSG00205040878	lncRNA gene	Chr7:85073671-85115762 (-)
JF1/MsJ	ENSUMUG00000052205	lncRNA gene	Chr7:94306581-94350046 (-)
LP/J	ENSMUSG00230045467	lncRNA gene	Chr7:95507640-95549731 (-)
NOD/ShiLtJ	ENSMUSG00190022082	lncRNA gene	Chr7:85336745-85378839 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010051156	lncRNA gene	Chr7:83529560-83572960 (-)
SPRET/EiJ	ENSMSPG00010013384	lncRNA gene	Chr7:84752588-84795042 (-)
WSB/EiJ	ENSIUOG00005011105	lncRNA gene	Chr7:85685809-85730882 (-)

Homology

• Gene Tree
  C230038L03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving C230038L03Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51

• Ensembl
  ENSMUSG00000085560 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085560	Ensembl Gene Model | MGI Sequence Detail	77288	C57BL/6J
transcript	ENSMUST00000129409	Ensembl | MGI Sequence Detail	2653	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55

TSS for C230038L03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr73566	Chr7:96601049-96601088 (-)	24 bp