BC065403 Gene Detail

Summary

• Symbol
  BC065403
• Name
  cDNA sequence BC065403
• Synonyms
  A930005F02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:3697430
  NCBI Gene: 100502819
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:72315926-72317149 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 40.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697430	lncRNA gene	Chr9:72269009-72317382 (-)
129S1/SvImJ	ENSMUSG00200043562	lncRNA gene	Chr9:69323370-69371584 (-)
A/J	ENSMUSG00195027002	lncRNA gene	Chr9:69120875-69169254 (-)
AKR/J	ENSMUSG00220042560	lncRNA gene	Chr9:69285484-69333711 (-)
BALB/cJ	ENSMUSG00180019632	lncRNA gene	Chr9:69235277-69283643 (-)
C3H/HeJ	ENSMUSG00175013057	lncRNA gene	Chr9:69248423-69296796 (-)
C57BL/6NJ	ENSMUSG00215037224	lncRNA gene	Chr9:69216074-69264297 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004210	antisense lncRNA gene	Chr9:69482821-69532260 (-)
CAST/EiJ	ENSTCUG00005032333	lncRNA gene	Chr9:69061309-69107624 (-)
CBA/J	ENSMUSG00210014492	lncRNA gene	Chr9:69329011-69377373 (-)
DBA/2J	ENSMUSG00185035575	lncRNA gene	Chr9:69352868-69401227 (-)
FVB/NJ	ENSMUSG00205039305	lncRNA gene	Chr9:69626233-69674605 (-)
JF1/MsJ	ENSUMUG00000039075	lncRNA gene	Chr9:69389200-69441927 (-)
LP/J	ENSMUSG00230027822	lncRNA gene	Chr9:69518368-69566576 (-)
NOD/ShiLtJ	ENSMUSG00190024009	lncRNA gene	Chr9:69456908-69505286 (-)
NZO/HlLtJ	ENSMUSG00225046850	lncRNA gene	Chr9:69659440-69707805 (-)
PWK/PhJ	ENSLUMG00010028304	lncRNA gene	Chr9:69313957-69363823 (-)
SPRET/EiJ	ENSMSPG00010023555	lncRNA gene	Chr9:70410865-70466752 (-)
WSB/EiJ	ENSIUOG00005027166	lncRNA gene	Chr9:68829168-68877412 (-)

Homology

• Gene Tree
  BC065403
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving BC065403
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000097211 (Evidence)
• NCBI Gene
  100502819

Representative Sequences			Length	Strain/Species
genomic	100502819	NCBI Gene Model | MGI Sequence Detail	1224	C57BL/6J
transcript	NR_152222	RefSeq | MGI Sequence Detail	1053	C57BL/6

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1925186

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90

TSS for BC065403:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90491	Chr9:72317054-72317104 (-)	70 bp