9330171B17Rik Gene Detail

Summary

• Symbol
  9330171B17Rik
• Name
  RIKEN cDNA 9330171B17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3696417
  NCBI Gene: 118567517
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:79360160-79362103 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 45.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3696417	lncRNA gene	Chr7:79360031-79362105 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004467	antisense lncRNA gene	Chr7:81614314-81616384 (+)
A/J	MGP_AJ_G0004447	antisense lncRNA gene	Chr7:79726587-79728659 (+)
AKR/J	MGP_AKRJ_G0004430	antisense lncRNA gene	Chr7:81431823-81433895 (+)
BALB/cJ	MGP_BALBcJ_G0004432	antisense lncRNA gene	Chr7:79418707-79420779 (+)
C3H/HeJ	MGP_C3HHeJ_G0004381	antisense lncRNA gene	Chr7:82093876-82095946 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004583	antisense lncRNA gene	Chr7:84814538-84816612 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004037	antisense lncRNA gene	Chr7:82265346-82267439 (+)
CAST/EiJ	MGP_CASTEiJ_G0004341	antisense lncRNA gene	Chr7:72969270-72971354 (+)
CBA/J	MGP_CBAJ_G0004376	antisense lncRNA gene	Chr7:87657514-87659584 (+)
DBA/2J	MGP_DBA2J_G0004390	antisense lncRNA gene	Chr7:78296453-78298523 (+)
FVB/NJ	MGP_FVBNJ_G0004407	antisense lncRNA gene	Chr7:78210499-78212562 (+)
LP/J	MGP_LPJ_G0004471	antisense lncRNA gene	Chr7:82869618-82871692 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004397	antisense lncRNA gene	Chr7:87825030-87827102 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004581	antisense lncRNA gene	Chr7:80888447-80890521 (+)
PWK/PhJ	MGP_PWKPhJ_G0004294	antisense lncRNA gene	Chr7:71470562-71472637 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004235	antisense lncRNA gene	Chr7:67880548-67882621 (+)
WSB/EiJ	MGP_WSBEiJ_G0004380	antisense lncRNA gene	Chr7:81208932-81211006 (+)

Homology

• Gene Tree
  9330171B17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9330171B17Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000039133 (Evidence)
• NCBI Gene
  118567517

Representative Sequences			Length	Strain/Species
genomic	118567517	NCBI Gene Model | MGI Sequence Detail	1944	C57BL/6J
transcript	AK034273	GenBank | ENA | DDBJ | MGI Sequence Detail	2052	C57BL/6J
polypeptide	Q9D5P0	UniProt | EBI | MGI Sequence Detail	128	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for 9330171B17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67361	Chr7:79360112-79360123 (+)	-42 bp
Tssr67362	Chr7:79360125-79360154 (+)	-20 bp
Tssr67363	Chr7:79360156-79360171 (+)	4 bp