9330171B17Rik Gene Detail

Summary

• Symbol
  9330171B17Rik
• Name
  RIKEN cDNA 9330171B17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3696417
  NCBI Gene: 118567517
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:79360160-79362103 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 45.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3696417	lncRNA gene	Chr7:79360031-79364147 (+)
129S1/SvImJ	ENSMUSG00200034794	protein coding gene	Chr7:66173712-66177963 (+)
129S1/SvImJ	ENSMUSG00200035709	lncRNA gene	Chr7:66173705-66175775 (+)
A/J	ENSMUSG00195015876	lncRNA gene	Chr7:70588664-70590736 (+)
AKR/J	ENSMUSG00220039032	lncRNA gene	Chr7:64130673-64132745 (+)
BALB/cJ	ENSMUSG00180013891	lncRNA gene	Chr7:67313771-67315843 (+)
C3H/HeJ	ENSMUSG00175021066	protein coding gene	Chr7:68085788-68090039 (+)
C3H/HeJ	ENSMUSG00175022557	lncRNA gene	Chr7:68085781-68087851 (+)
C57BL/6NJ	ENSMUSG00215028732	lncRNA gene	Chr7:67184891-67186965 (+)
C57BL/6NJ	ENSMUSG00215024045	protein coding gene	Chr7:67184898-67189154 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004037	antisense lncRNA gene	Chr7:82265346-82267439 (+)
CAST/EiJ	ENSTCUG00005045925	lncRNA gene	Chr7:70638609-70640693 (+)
CBA/J	ENSMUSG00210023812	protein coding gene	Chr7:67937062-67941313 (+)
CBA/J	ENSMUSG00210024019	lncRNA gene	Chr7:67937055-67939125 (+)
DBA/2J	ENSMUSG00185048837	lncRNA gene	Chr7:72259795-72261865 (+)
DBA/2J	ENSMUSG00185044059	protein coding gene	Chr7:72259802-72264053 (+)
FVB/NJ	ENSMUSG00205028691	lncRNA gene	Chr7:67826324-67828387 (+)
JF1/MsJ	ENSUMUG00000033436	lncRNA gene	Chr7:76920415-76922499 (+)
LP/J	ENSMUSG00230011991	protein coding gene	Chr7:78349430-78353686 (+)
LP/J	ENSMUSG00230016497	lncRNA gene	Chr7:78349423-78351497 (+)
NOD/ShiLtJ	ENSMUSG00190019538	lncRNA gene	Chr7:68078399-68080471 (+)
NZO/HlLtJ	ENSMUSG00225042608	lncRNA gene	Chr7:76591024-76593098 (+)
NZO/HlLtJ	ENSMUSG00225041206	protein coding gene	Chr7:76591031-76595287 (+)
PWK/PhJ	ENSLUMG00010017682	lncRNA gene	Chr7:66515266-66517341 (+)
SPRET/EiJ	ENSMSPG00010026554	lncRNA gene	Chr7:66926587-66928660 (+)
WSB/EiJ	ENSIUOG00005021420	lncRNA gene	Chr7:68426476-68428550 (+)

Homology

• Gene Tree
  9330171B17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9330171B17Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000039133 (Evidence)
• NCBI Gene
  118567517

Representative Sequences			Length	Strain/Species
genomic	118567517	NCBI Gene Model | MGI Sequence Detail	1944	C57BL/6J
transcript	AK034273	GenBank | ENA | DDBJ | MGI Sequence Detail	2052	C57BL/6J
polypeptide	Q9D5P0	UniProt | EBI | MGI Sequence Detail	128	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for 9330171B17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67361	Chr7:79360112-79360123 (+)	-42 bp
Tssr67362	Chr7:79360125-79360154 (+)	-20 bp
Tssr67363	Chr7:79360156-79360171 (+)	4 bp