6820431F20Rik Pseudogene Detail

Summary

• Symbol
  6820431F20Rik
• Name
  RIKEN cDNA 6820431F20 gene

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3694236
  NCBI Gene: 547150
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:20143848-20172994 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 10.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3694236	pseudogene	Chr8:20143545-20182492 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039842	pseudogene	Chr8:64542222-64590072 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185007310	pseudogene	Chr8:17290822-17625318 (+)
DBA/2J	ENSMUSG00185041644	pseudogene	Chr8:20898656-20926847 (+)
DBA/2J	ENSMUSG00185007353	pseudogene	Chr8:19535959-19556963 (+)
DBA/2J	ENSMUSG00185041816	pseudogene	Chr8:21847288-21876391 (+)
DBA/2J	ENSMUSG00185007332	pseudogene	Chr8:19056077-19088823 (+)
DBA/2J	ENSMUSG00185007105	pseudogene	Chr8:17769673-17806054 (+)
DBA/2J	ENSMUSG00185007122	pseudogene	Chr8:19960120-19996622 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000032920	pseudogene	Chr8:18174738-18211176 (+)
JF1/MsJ	ENSUMUG00000035551	pseudogene	Chr8:19220615-19383667 (+)
JF1/MsJ	ENSUMUG00000035632	pseudogene	Chr8:19554919-19583889 (+)
JF1/MsJ	ENSUMUG00000031303	pseudogene	Chr8:23049604-23213997 (+)
JF1/MsJ	ENSUMUG00000030890	pseudogene	Chr8:20266078-20449689 (+)
LP/J	ENSMUSG00230012395	pseudogene	Chr8:22215255-22251195 (+)
LP/J	ENSMUSG00230012293	pseudogene	Chr8:20764047-20954007 (+)
LP/J	ENSMUSG00230012405	pseudogene	Chr8:23035166-23064306 (+)
LP/J	ENSMUSG00230012480	pseudogene	Chr8:25243323-25272473 (+)
LP/J	ENSMUSG00230023993	pseudogene	Chr8:19088018-19124403 (+)
LP/J	ENSMUSG00230024694	pseudogene	Chr8:19695998-19725078 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225042949	pseudogene	Chr8:29245887-29401679 (+)
NZO/HlLtJ	ENSMUSG00225042388	pseudogene	Chr8:28041617-28078033 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010042469	pseudogene	Chr8:66403203-66438738 (-)
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 6820431F20Rik
• Find Mice (IMSR)
  29 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  72
• RefSeq
  1

• Ensembl
  ENSMUSG00000071796 (Evidence), ENSMUSG00000121492 (Evidence)
• NCBI Gene
  547150

Representative Sequences			Length	Strain/Species
genomic	547150	NCBI Gene Model | MGI Sequence Detail	29147	C57BL/6J
transcript	NR_030708	RefSeq | MGI Sequence Detail	4659	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:321899 Park H, et al., Non-coding RNA Neat1 and Abhd11os expressions are dysregulated in medium spiny neurons of Huntington disease model mice. Neurosci Res. 2019 Oct;147:58-63
• Latest
  J:332494 Dong X, et al., Keratinocyte-derived defensins activate neutrophil-specific receptors Mrgpra2a/b to prevent skin dysbiosis and bacterial infection. Immunity. 2022 Jul 15;55(9):1645-1662

TSS for 6820431F20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80556	Chr8:20143731-20143762 (+)	-101 bp